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NOAA-ORR-ERD / PyGnome

The General NOAA Operational Modeling Environment
https://gnome.orr.noaa.gov/doc/pygnome/index.html
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Building PyGnome Error Fatal Netcdf in linux #56

Closed Lemcastroro closed 4 years ago

Lemcastroro commented 4 years ago

Hi everyone!

I have tried to build pygnome in Linux but when I put "python setup.py develop" I get this error:

../lib_gnome/TimeGridVel_c.cpp:17:10: fatal error: netcdf.h: No existe el archivo o el directorio 17 | #include "netcdf.h

I have already verified that the netcdf4 library is installed

Captura_error

and I don't know if there is something else that I am missing.

Thanks for your help :)

ChrisBarker-NOAA commented 4 years ago

We'll have to look closer on Linux, but first: how is netcdf4 installed? if installed with the system package manager, is the "-devel" version of the package installed? often Linux packages the headers, etc needed for compiling separately from the library itself.

Also, in case it matters: what distro and version are you using?

Lemcastroro commented 4 years ago

I checked everything and it had been a problem to bind the compiler with the path of the includes.

Thanks for your help 👍

I love PyGnome <3 , I'm learning a lot about it

ChrisBarker-NOAA commented 4 years ago

You've got it working now?

BTW, we have a Python 2 and 3 compatible version going -- it's not quite fully working (48 tests fail) but if you want to check it out, it's in the "py23" branch.

We are aiming for "pyhon 3 code that runs on python2" at this point.

Lemcastroro commented 4 years ago

Yes, I have it working right now.

Interesting! I'll check it out.

Could you tell me what these failed tests correspond or are related to?

Thanks :)

ChrisBarker-NOAA commented 4 years ago

We haven't fully investigated the failed tests yet, but at least some of them seem to be in the code that interpolates gridded data :-(

-CHB