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NP-Omix / BioCompass

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Goals #46

Open tiagolbiotech opened 7 years ago

tiagolbiotech commented 7 years ago

Very Short term

Goal Priority Difficulty
Update subcluster_dictionary.csv Very High Medium
Incorporate subcluster_dictionary.csv search by smCOG Very High Medium
Add --database option to avoid downloading same clusters again Very High Low
Run multigeneBLAST in parallel High High
Add multiple strains option Very High Low
Incorporate hits within same genomes High Medium
Incorporate calibration curve Very High High

Short term

Goal Priority Difficulty

Implement "light memory option", deleting unused iterations Remove multiple self-loops | Medium | Medium Incorporate pFAM domais and Jaccard index | Very High | Medium Generate aligment vizualition for gene cluster families | High | High Automate network plotting | High | Low

Long term

Goal Priority Difficulty
Add border refinement option High Medium
Add "supercluster" separation option High Very High
Improve matrix rules High Very High
Improve filtering options Low High
Incorporate bidirectional alignment Low High
Implement interface Low Very High