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NPLinker / nplinker

A python framework for data mining microbial natural products by integrating genomics and metabolomics data
https://nplinker.github.io/nplinker
Apache License 2.0
16 stars 10 forks source link

Podp: not all genome IDs are in antismashDB #242

Closed liannette closed 2 months ago

liannette commented 4 months ago

In podp mode, the genome RefSeq IDs are used to download the antismash results from antismashDB. However, not all RefSeq genomes are in antismashDB, leading to an incomplete dataset.

Suggestion: Check whether all genomes could be downloaded from antismashDB, and if not, output a message that the missing antimash results need to be manually added before continuing the script.

CunliangGeng commented 2 months ago

Will add a log message (Warning) to report the missing antismash results