Add LinkGraph to replace ObjectLink and LinkCollection

NPLinker / nplinker

A python framework for data mining microbial natural products by integrating genomics and metabolomics data

https://nplinker.github.io/nplinker

Apache License 2.0

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Add LinkGraph to replace ObjectLink and LinkCollection #252

Closed CunliangGeng closed 3 months ago

CunliangGeng commented 3 months ago

The LinkGraph class is a wrapper of networkx.Graph, which treats links as edges between objects or nodes (e.g. GCF, spectrum) while the scoring data of the links is treated as the attributes of the edges in the graph. This graph data structure can perfectly replace the legacy ObjectLink and LinkCollection classes.

CunliangGeng commented 3 months ago

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CunliangGeng commented 3 months ago

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Jun 10, 3:24 AM EDT: @CunliangGeng started a stack merge that includes this pull request via Graphite.
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Jun 10, 3:29 AM EDT: @CunliangGeng merged this pull request with Graphite.