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NRCan / Q2Pipe

Qiime2 based pipeline designed to facilitate and standardise ecological studies by metabarcoding using Illumina Miseq data
MIT License
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Classifier NB_THREAD option standalone #19

Closed Patg13 closed 11 months ago

Patg13 commented 11 months ago

Because the classification step is extremely RAM intensive, using the same NB_THREADS option as the other steps often lead to application crash.

To reduce the risk of it happening, a new "CLASSIFIER_NB_THREADS=" will be included in the option file (with a fallback method in step 6 if the option file does not include it)

It will be implemented in next Q2Pipe version

Patg13 commented 11 months ago

Feature implemented in latest merge

20