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NRCan / Q2Pipe

Qiime2 based pipeline designed to facilitate and standardise ecological studies by metabarcoding using Illumina Miseq data
MIT License
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Temporary folder definition causing errors when using Apptainer #21

Open Patg13 opened 9 months ago

Patg13 commented 9 months ago

If the user define a different temporary folder in Apptainer, but not with the TEMPORARY_DIRECTORY variable, the container and the pipeline does not write at the same place, causing a crash