Improve trimming parameter testing

NRCan / Q2Pipe

Qiime2 based pipeline designed to facilitate and standardise ecological studies by metabarcoding using Illumina Miseq data

MIT License

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Improve trimming parameter testing #5

Open Patg13 opened 1 year ago

Patg13 commented 1 year ago

Even with the implementation of Figaro, it still can be problematic to choose the correct trimming parameter. A possibility would be to use vsearch assembly functionality to test trimming parameters in real-time instead of during dada2 process.