Upgrade all dependencies to latest stable version

[bstein]

This issue tracks the work of upgrading each dependency to its latest stable version.

Phase 1 - Upgrade most package.json dependencies

• [x] ⏫ chalk: ~1.1.0 → ~5.0.1
• [x] ⏫ del: ~2.2.0 → ~7.0.0
• v7.0.0: Package became pure ESM
  • [x] Use async import('del') instead of gulp-load-plugins (more info)
• [x] 🗑️ estraverse: ~4.2.0 → Remove since it is not used
• [x] 🔼 electron: ~20.0.3 → ~20.1.3
• [x] ⏫ fs-jetpack: ~0.9.2 → ~4.3.1
• [x] ⏫ gulp-angular-templatecache: ~1.8.0 → ~3.0.1
• [x] ⏫ gulp-autoprefixer: ~3.1.0 → ~8.0.0
• Started using browserslist configuration instead of browsers option
  • [x] Add browserslist configuration to package.json and remove browsers key/value from options when calling
• [x] ⏫ gulp-clean: ^0.3.2 → ~0.4.0
• [x] ⏫ gulp-csso: ~1.1.0 → ~4.0.1
• [x] ⏫ gulp-debug: ~2.1.2 → ~4.0.0
  • [x] Move to optionalDependencies
• [x] ⏫ gulp-filter: 3.0.1 → ~7.0.0
• [x] ⏫ gulp-flatten: ~0.2.0 → ~0.4.0
• [x] ⏫ gulp-htmlmin: ~1.3.0 → ~5.0.1
• [x] ⏫ gulp-inject: ~4.0.0 → ~5.0.5
• [x] ⏫ gulp-load-plugins: ~1.2.0 → ~2.0.8
• [x] 🔼 gulp-ng-annotate: ~2.0.0 → ~2.1.0
• [x] 🗑️ gulp-protractor: ~2.2.0 → Remove since it is not used
• [x] ⏫ gulp-rename: ~1.2.2 → ~2.0.0
• [x] ⏫ gulp-replace: ~0.5.4 → ~1.1.3
• [x] ⏫ gulp-rev: ~7.0.0 → ~9.0.0
• [x] ⏫ gulp-rev-replace: ~0.4.2 → ~0.4.4
• [x] ⏫ gulp-size: ~2.1.0 → ~4.0.1
• [x] ⏫ gulp-sourcemaps: ~1.6.0 → ~3.0.0
• v2.2.0: Started using file.clone() to create source map files
  • [x] Use gulp-filter to exclude .map files before piping to gulp-rev-replace
• [x] ➡️ gulp-streamify: ^1.0.2 → ~1.0.2
• [x] ⏫ gulp-uglify: ~1.5.1 → ~3.0.2
• [x] ⏫ gulp-useref: ~3.0.5 → ~5.0.0
• [x] 🗑️ gulp-util: ~3.0.6 → Remove since it is deprecated
  • [x] Add fancy-log and replace util.log() with fancyLog()
  • [x] Use chalk and replace util.colors with chalk
  • [x] Use through2 and replace util.noop() with through2.obj()
• [x] 🔼 lazypipe: ~1.0.1 → ~1.0.2
• [x] 🔼 lodash: ~4.6.1 → ~4.17.21
• [x] ⏫ merge-stream: ~1.0.0 → ~2.0.0
• [x] 🔼 q: ~1.4.1 → ~1.5.1
• [x] 🔼 request: ^2.75.0 → ~2.88.2
• [x] ⏫ request-progress: ^2.0.1 → ~3.0.0
• v3.0.0: state.percentage was removed
  • [x] Use state.percent instead of state.percentage
• [x] 🔼 sass: ~1.54.0 → ~1.54.9
• [x] ⏫ through2: ~2.0.0 → ~4.0.2
• [x] 🔼 tree-kill: ~1.0.0 → ~1.2.2
• [x] ⏫ yargs: ^4.3.2 → ~17.5.1

Phase 2 - Upgrade babel, eslint, and rollup packages

Upgrade to Babel 7 (more info)

• [x] 📦 babel-core@~6.7.5 → @babel/core@~7.19.1
  • [x] Replace .babelrc file with babel.config.json file
  • [x] Add babel-plugin-angularjs-annotate and include in plugins in babel.config.json
  • [x] Make any syntax changes necessary for compatibility (e.g., remove unused imports)
• [x] 📦 babel-eslint@~6.0.0 → @babel/eslint-parser@~7.19.1
  • [x] Update parser and set parserOptions in .eslintrc file
• [x] 📦 babel-preset-es2015-loose-rollup@~7.0.0 → @babel/preset-env@~7.19.1
  • [x] Include in presets in babel.config.json file

Upgrade eslint packages

• [x] ⏫ eslint-plugin-angular: ~1.0.0 → ~4.1.0
  • [x] Update plugins to include angular in .eslintrc file
• [x] ⏫ eslint-plugin-lodash: ~1.5.1 → ~7.4.0
• [x] ⏫ gulp-eslint: ~2.0.0 → ~6.0.0

Upgrade rollup

• [x] ⏫ rollup: ~0.34.1 → ~2.79.0
  • [x] Refactor bundle() function in ./tasks/scripts.js file to use newer syntax
• [x] 📦 rollup-plugin-babel@~2.6.1 → @rollup/plugin-babel@~5.3.1
  • [x] Update babel import in ./tasks/scripts.js file
  • [x] Set babelHelpers: 'bundled' in options when calling babel()

Phase 3 - Upgrade non-angular ./app/package.json dependencies

• [x] ⏫ adm-zip: ~0.4.7 → ~0.5.9
• [x] ⏫ archiver: ~4.0.1 → ~5.3.1
• [x] 🔼 bootstrap-sass: ~3.3.6 → ~3.4.3
• [x] ⏫ fs-jetpack: ~0.9.2 → ~4.3.1
• [x] ⏫ jquery: ~2.2.3 → ~3.6.1
• v3.0.0: Deprecated ready() function
  • [x] Replace with equivalents (more info)
• [x] ⏫ js2xmlparser: ~1.0.0 → ~4.0.2
  • [x] Replace js2xmlparser() with js2xmlparser.parse()
• [x] 🔼 jszip: ~3.1.1 → ~3.10.1
• [x] 🔼 lodash: ~4.12.0 → ~4.17.21
• [x] 🗑️ openport: ~0.0.4 → Remove since it is deprecated
  • [x] Add portfinder and replace openport.find() with portfinder.getPort()
• [x] ⏫ xml2js: ~0.4.16 → ~0.4.23
• [x] ⏫ yamljs: ~0.2.8 → ~0.3.0

Phase 4 - Upgrade angular ./app/package.json dependencies

• [x] 🔼 angular: ~1.5.5 → ~1.8.3
• v1.6.0: Removed $http's custom callback functions success() and error()
  • [x] Replace with standard then() / catch() promise methods (more info)
• v1.6.0: The default hash prefix changed from empty string "" to the bang "!"
  • [x] Explicitly set no hash prefix
• v1.7.0: $interval.cancel() now throws an error if called with a promise that was not generated by $interval().
  • [x] In runController.js: Remove $interval.cancel() call and just set vm.getStatus to undefined instead
• [x] 🔼 angular-animate: ~1.5.5 → ~1.8.3
• [x] 🔼 angular-aria: ~1.5.5 → ~1.8.3
• [x] 🔼 angular-messages: ~1.5.5 → ~1.8.3
• [x] 🔼 angular-resource: ~1.5.5 → ~1.8.3
• [x] 🔼 angular-sanitize: ~1.5.5 → ~1.8.3
• [x] ⏫ angular-toastr: ~1.7.0 → ~2.1.1
• v2.0.0: The toast styles are no longer automatically applied
  • [x] Update toastClass to include toast in index.config.js
• [x] 🔼 angular-translate: ~2.11.0 → ~2.19.0
• [x] 🔼 angular-translate-handler-log: ~2.11.0 → ~2.19.0
• [x] ⏫ angular-ui-bootstrap: ~1.5.5 → ~2.5.6
• v2.0.0: The <uib-accordion-group ... /> element is now only available via the uib-accordion-group directive
  • [x] Replace <uib-accordion-group ... /> elements with <div uib-accordion-group ... /> (more info)
  • [x] Add panel-default class, since it is no longer automatically applied when using the directive
• [x] 🔼 angular-ui-grid: 4.0.2 → ~4.11.1
• [x] ⏫ angular-ui-router: ~0.2.18 → ~1.0.30
• When calling $state.transitionTo() in order to reload the analysis page after setting the project, the following error is thrown: Transition Rejection($id: 0 type: 2, message: The transition has been superseded by a different transition, detail: Transition#2( 'analysis'{} -> 'analysis'{} ))
  • [x] Wrap the $state.transitionTo() call in $timeout() so the transition only starts after current processes finish (more info)
• [x] 🔼 ui-grid-draggable-rows: ~0.3.2 → ~0.3.3