chx can't find any conda env

[yugangzhang]

We can't use conda on xf11id now!

python
xf11id@xf11id-ws1:~$ whoami
xf11id
xf11id@xf11id-ws1:~$ conda info
bash: conda: command not found
xf11id@xf11id-ws1:~$ 

[ericdill]

What is the output of cat ~/. bashrc

[yugangzhang]

xf11id@xf11id-ws1:~$ cat ~/. bashrc

cat: /home/xf11id/.: Is a directory
# ~/.bashrc: executed by bash(1) for non-login shells.
# see /usr/share/doc/bash/examples/startup-files (in the package bash-doc)
# for examples

# If not running interactively, don't do anything
case $- in
    *i*) ;;
      *) return;;
esac

# don't put duplicate lines or lines starting with space in the history.
# See bash(1) for more options
HISTCONTROL=ignoreboth

# append to the history file, don't overwrite it
shopt -s histappend

# for setting history length see HISTSIZE and HISTFILESIZE in bash(1)
HISTSIZE=1000
HISTFILESIZE=2000

# check the window size after each command and, if necessary,
# update the values of LINES and COLUMNS.
shopt -s checkwinsize

# If set, the pattern "**" used in a pathname expansion context will
# match all files and zero or more directories and subdirectories.
#shopt -s globstar

# make less more friendly for non-text input files, see lesspipe(1)
#[ -x /usr/bin/lesspipe ] && eval "$(SHELL=/bin/sh lesspipe)"

# set variable identifying the chroot you work in (used in the prompt below)
if [ -z "${debian_chroot:-}" ] && [ -r /etc/debian_chroot ]; then
    debian_chroot=$(cat /etc/debian_chroot)
fi

# set a fancy prompt (non-color, unless we know we "want" color)
case "$TERM" in
    xterm-color) color_prompt=yes;;
esac

# uncomment for a colored prompt, if the terminal has the capability; turned
# off by default to not distract the user: the focus in a terminal window
# should be on the output of commands, not on the prompt
#force_color_prompt=yes

if [ -n "$force_color_prompt" ]; then
    if [ -x /usr/bin/tput ] && tput setaf 1 >&/dev/null; then
    # We have color support; assume it's compliant with Ecma-48
    # (ISO/IEC-6429). (Lack of such support is extremely rare, and such
    # a case would tend to support setf rather than setaf.)
    color_prompt=yes
    else
    color_prompt=
    fi
fi

if [ "$color_prompt" = yes ]; then
    PS1='${debian_chroot:+($debian_chroot)}\[\033[01;32m\]\u@\h\[\033[00m\]:\[\033[01;34m\]\w\[\033[00m\]\$ '
else
    PS1='${debian_chroot:+($debian_chroot)}\u@\h:\w\$ '
fi
unset color_prompt force_color_prompt

# If this is an xterm set the title to user@host:dir
case "$TERM" in
xterm*|rxvt*)
    PS1="\[\e]0;${debian_chroot:+($debian_chroot)}\u@\h: \w\a\]$PS1"
    ;;
*)
    ;;
esac

# enable color support of ls and also add handy aliases
if [ -x /usr/bin/dircolors ]; then
    test -r ~/.dircolors && eval "$(dircolors -b ~/.dircolors)" || eval "$(dircolors -b)"
    alias ls='ls --color=auto'
    #alias dir='dir --color=auto'
    #alias vdir='vdir --color=auto'

    #alias grep='grep --color=auto'
    #alias fgrep='fgrep --color=auto'
    #alias egrep='egrep --color=auto'
fi

# some more ls aliases
#alias ll='ls -l'
#alias la='ls -A'
#alias l='ls -CF'

# Alias definitions.
# You may want to put all your additions into a separate file like
# ~/.bash_aliases, instead of adding them here directly.
# See /usr/share/doc/bash-doc/examples in the bash-doc package.

if [ -f ~/.bash_aliases ]; then
    . ~/.bash_aliases
fi

# enable programmable completion features (you don't need to enable
# this, if it's already enabled in /etc/bash.bashrc and /etc/profile
# sources /etc/bash.bashrc).
if ! shopt -oq posix; then
  if [ -f /usr/share/bash-completion/bash_completion ]; then
    . /usr/share/bash-completion/bash_completion
  elif [ -f /etc/bash_completion ]; then
    . /etc/bash_completion
  fi
fi
#export PYTHONPATH=$PYTHONPATH:/home/fluerasu/python/site-packages
export PATH=$PATH:/nfs/xf11id/shared
export https_proxy=https://proxy:8888
export http_proxy=http://proxy:8888
export PATH=/nfs/xf11id/mc/bin:$PATH
xf11id@xf11id-ws1:~$ 

[ericdill]

Add export PATH=/opt/conda/bin:$PATH to the end of your bashrc and then source ~/.bashrc

This is so hard to type on a phone keyboard!

[yugangzhang]

@arkilic et.al. are helping us at chx beamline.

[ghost]

Even after adding it to the path, @yugangzhang could not find his environments.

conda info gives:

Current conda install:

             platform : linux-64
        conda version : 3.17.0
  conda-build version : 1.17.0
       python version : 3.4.3.final.0
     requests version : 2.7.0
     root environment : /opt/conda  (read only)
  default environment : /opt/conda
     envs directories : /home/xf11id/.conda/envs
                        /home/xf11id/envs
                        /opt/conda/envs
        package cache : /home/xf11id/.conda/envs/.pkgs
                        /home/xf11id/envs/.pkgs
                        /opt/conda/pkgs
         channel URLs : https://conda.anaconda.org/ericdill/linux-64/
                        https://conda.anaconda.org/ericdill/noarch/
                        https://repo.continuum.io/pkgs/free/linux-64/
                        https://repo.continuum.io/pkgs/free/noarch/
                        https://repo.continuum.io/pkgs/pro/linux-64/
                        https://repo.continuum.io/pkgs/pro/noarch/
          config file : /home/xf11id/.condarc
    is foreign system : False

Obv, this is looking at the local condarc that points to /opt/conda/envs instead of /opt/conda_envs. We switched back to the installation environment condarc (saved @ericdill 's condarc in home which was what conda picked up) and everything is working again so chx is happy.

Current conda install:

             platform : linux-64
        conda version : 3.17.0
  conda-build version : 1.17.0
       python version : 3.4.3.final.0
     requests version : 2.7.0
     root environment : /opt/conda  (read only)
  default environment : /opt/conda_envs/collection
     envs directories : /home/xf11id/mc/envs
                        /opt/conda_envs
        package cache : /home/xf11id/mc/envs/.pkgs
                        /opt/conda_envs/.pkgs
         channel URLs : https://conda.anaconda.org/latest/linux-64/
                        https://conda.anaconda.org/latest/noarch/
                        https://conda.anaconda.org/anaconda/linux-64/
                        https://conda.anaconda.org/anaconda/noarch/
          config file : /opt/conda/.condarc
    is foreign system : False