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NSLS-II / lsdc

LSDC - Life Sciences Data Collection
https://nsls-ii.github.io/lsdc
BSD 3-Clause "New" or "Revised" License
3 stars 14 forks source link

imports #1

Open JunAishima opened 4 years ago

JunAishima commented 4 years ago 
from analysisstore.client.commands import AnalysisClient
from beamline_lib import *
from beamline_support import *
from bluesky.callbacks.broker import post_run
from bluesky.callbacks.broker import verify_files_saved
from bluesky.callbacks import *
from bluesky.global_state import gs
from bluesky.run_engine import RunEngine
from bluesky.utils import get_history
from bluesky.utils import install_qt_kicker
from collections import Counter
from cv2 import *
from daq_lib import *
from daq_macros import *
from databroker import Broker
from datetime import datetime
from datetime import (datetime, timedelta)
from det_lib import *
from element_info import *
from element_info import element_info
from element_info import element_info #skinner, from nsls-I
from epics import PV
from functools import reduce
from __future__ import print_function
from gon_lib import *
from importlib import reload
from ispyb.xmltools import mx_data_reduction_to_ispyb, xml_file_to_dict
from math import *
from numpy.lib import recfunctions as rfn  # needs to be imported separately
from operator import mul
from ophyd.areadetector.filestore_mixins import (FileStoreTIFFIterativeWrite,
from ophyd import *
from ophyd import Component as Cpt
from ophyd import Device, Component as Cpt, EpicsMotor, EpicsSignalRO
from ophyd import EpicsMotor
from ophyd import EpicsScaler
from ophyd import (SingleTrigger, TIFFPlugin, ProsilicaDetector,
from ophyd.mca import (EpicsMCA, EpicsDXP, Mercury1, SoftDXPTrigger)
from PIL import Image
from pylab import *
from PyMca import ElementsInfo
from PyMca.McaAdvancedFit import McaAdvancedFit
from PyMca.PyMcaQt import *
from PyMca.QtBlissGraph import QtBlissGraph
from pyOlog import OlogClient
from pyOlog.OlogDataTypes import *
from PyQt4 import QtCore
from PyQt4 import QtGui
from PyQt4.QtCore import *
from PyQt4.QtGui import *
from QPeriodicTable import *
from QtEpicsMotorEntry import *
from QtEpicsMotorLabel import *
from QtEpicsPVEntry import *
from QtEpicsPVLabel import *
from raddoseLib import *
from random import randint
from robot_lib import *
from shutil import copyfile
from start_bs import *
from string import *
from time import sleep
from XSDataMXv1 import XSDataResultCharacterisation
import albulaUtils
import amostra.client.commands as acc
import atexit
import attenCalc
import beamline_lib
import beamline_lib #did this really screw me if I imported b/c of daq_utils import??
import beamline_support
import bluesky.plans as bp
import bson
import conftrak.client.commands as ccc
import conftrak.exceptions
import cStringIO
import cv2
import daq_lib
import daq_macros
import daq_utils
import dateutil.parser
import db_lib
import dectris.albula
import det_lib
import epics
import epics
import epics_det
import filecmp
import fileinput
import functools
import Gen_Commands
import Gen_Traj_Square
import getpass
import glob
import grp
import ImageQt
import ispyb.factory
import ispybLib
import ispybLib
import itertools as iter
import json
import lsdb1
import lsdcOlog
import math
import matplotlib.pyplot as plt
import metadatastore.commands
import mysql.connector
import numpy as np
import numpy as np
import numpy as np
import ophyd
import ophyd.areadetector.cam as cam
import os
import os.path
import pandas
import parseSheet
import qttable
import raddoseLib
import requests
import RobotControlLib
import robot_lib
import scipy
import shutil
import six
import socket
import start_bs
import string
import StringIO
import subprocess
import super_state_machine
import sys
import thread
import _thread
import time
import urllib
import uuid
import xmltodict
import yappi
JunAishima commented 4 years ago

pip list output:

amostra (0.1.3+3.g06e6cfb)
anaconda-client (1.2.1)
analysisstore (0+unknown)
backports-abc (0.4)
bluesky (0.5.0+55.g1b29b9b)
boltons (16.0.2.dev0)
channelarchiver (0.0.5)
clyent (1.2.0)
conftrak (0+untagged.28.ge5832dc)
cycler (0.9.0)
cytoolz (0.7.4)
databroker (0.4.1)
datamuxer (0.3.0)
decorator (4.0.6)
doct (1.0.0)
event-model (1.0.2)
filestore (0.3.0+5.g8a589c4.dirty)
h5py (2.5.0)
historydict (1.1.0)
humanize (0.5.1)
ipykernel (4.1.1)
ipython (4.0.1)
ipython-genutils (0.1.0)
ipywidgets (4.1.0)
Jinja2 (2.8)
jsonschema (2.4.0)
jupyter-client (4.1.1)
jupyter-core (4.0.6)
keyring (5.3)
ldap (1.0.2)
ldap3 (1.0.4)
lmfit (0.9.3rc1-6-g1a3ea0b)
MarkupSafe (0.23)
matplotlib (1.5.1)
metadataclient (0.1.1+4.gca4a9c4)
metadatastore (0.6.0+0.gb0c9b00.dirty)
mistune (0.7.1)
mongoengine (0.10.5)
mongoquery (1.1.0)
nbconvert (4.1.0)
nbformat (4.0.1)
networkx (1.10)
notebook (4.0.6)
numpy (1.10.2)
ophyd (0.2.2+63.g2da52fd)
pandas (0.17.1)
path.py (0.0.0)
pexpect (3.3)
pickleshare (0.5)
Pillow (3.0.0)
PIMS (0.3.3+23.g818094d)
pip (9.0.1)
prettytable (0.7.2)
ptyprocess (0.5)
pyasn1 (0.1.9)
pycallgraph2 (1.1.3)
pyepics (3.2.6)
Pygments (2.0.2)
pymongo (3.2.1)
pyOlog (0.3.0)
pyparsing (2.0.3)
python-dateutil (2.4.2)
pytz (2015.7)
PyYAML (3.11)
pyzmq (15.1.0)
requests (2.9.0)
scikit-image (0.11.3)
scipy (0.16.1)
setuptools (19.1.1)
simplegeneric (0.8.1)
six (1.10.0)
slicerator (0.9.7)
super-state-machine (1.0)
terminado (0.5)
tifffile (0.3.1)
tornado (4.3)
traitlets (4.0.0)
tzlocal (1.1.2)
ujson (1.35)
wheel (0.26.0)
xlrd (1.0.0)
xmltodict (0.10.1)
xray-vision (0.0.5)
JunAishima commented 4 years ago

conda list output:

# Name                    Version                   Build  Channel
amostra                   0.1.5                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/nsls2-tag
anaconda-client           1.2.1                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
analysisstore             0+unknown                pypi_0    pypi
backports_abc             0.4                      py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
bluesky                   0.5.0.post55    55_g1b29b9b_py34    https://pergamon.cs.nsls2.local:8443/conda/nsls2-dev
boltons                   16.0.0.post15   15_gae2a901_py34    https://pergamon.cs.nsls2.local:8443/conda/nsls2-dev
channelarchiver           0.0.5.6.post4   4_gd3e9283_py34    https://pergamon.cs.nsls2.local:8443/conda/nsls2-dev
clyent                    1.2.0                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
conftrak                  0+untagged.28.ge5832dc          pypi_0    pypi
cycler                    0.9.0                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
cytoolz                   0.7.4                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
databroker                0.4.1.post0     0_g867a0c0_py34    https://pergamon.cs.nsls2.local:8443/conda/nsls2-dev
datamuxer                 0.3.0.post0              py34_0    https://pergamon.cs.nsls2.local:8443/conda/nsls2
decorator                 4.0.6                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
doct                      1.0.1.post9     9_g6af1deb_py34    https://pergamon.cs.nsls2.local:8443/conda/nsls2-dev
epics-base                3.14.12.5                     0    https://pergamon.cs.nsls2.local:8443/conda/nsls2
event-model               1.0.2.post0              py34_0    https://pergamon.cs.nsls2.local:8443/conda/nsls2-dev
filestore                 0.3.0.post5     5_g8a589c4_py34    https://pergamon.cs.nsls2.local:8443/conda/nsls2-dev
fontconfig                2.11.1                        5    https://pergamon.cs.nsls2.local:8443/conda/anaconda
freetype                  2.5.5                         0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
h5py                      2.5.0               np110py34_4    https://pergamon.cs.nsls2.local:8443/conda/anaconda
hdf5                      1.8.15.1                      2    https://pergamon.cs.nsls2.local:8443/conda/anaconda
historydict               1.1.0.post1     1_g3007913_py34    https://pergamon.cs.nsls2.local:8443/conda/nsls2-dev
humanize                  0.5.1                    pypi_0    pypi
ipykernel                 4.1.1                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
ipython                   4.0.1                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
ipython_genutils          0.1.0                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
ipywidgets                4.1.0                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
jbig                      2.1                           0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
jinja2                    2.8                      py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
jpeg                      8d                            0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
jsonschema                2.4.0                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
jupyter_client            4.1.1                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
jupyter_core              4.0.6                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
keyring                   5.3                      py34_0    https://pergamon.cs.nsls2.local:8443/conda/nsls2
ldap                      1.0.2                    pypi_0    pypi
ldap3                     1.0.4                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
libgfortran               1.0                           0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
libpng                    1.6.17                        0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
libsodium                 1.0.3                         0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
libtiff                   4.0.6                         1    https://pergamon.cs.nsls2.local:8443/conda/anaconda
libxml2                   2.9.2                         0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
lmfit                     0.9.3rc1.post6  6_g1a3ea0b_py34    https://pergamon.cs.nsls2.local:8443/conda/nsls2-dev
markupsafe                0.23                     py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
matplotlib                1.5.1               np110py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
metadatastore             0.6.0.post0     0_gb0c9b00_py34    https://pergamon.cs.nsls2.local:8443/conda/nsls2-dev
mistune                   0.7.1                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
mongoengine               0.10.5                   py34_2    https://pergamon.cs.nsls2.local:8443/conda/nsls2
mongoquery                1.1.0                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/nsls2-tag
nbconvert                 4.1.0                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
nbformat                  4.0.1                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
ncurses                   5.9                           6    https://pergamon.cs.nsls2.local:8443/conda/nsls2
networkx                  1.10                     py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
notebook                  4.0.6                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
numpy                     1.10.2                   py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
openblas                  0.2.14                        3    https://pergamon.cs.nsls2.local:8443/conda/anaconda
openssl                   1.0.2d                        0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
ophyd                     0.2.2.post63    63_g2da52fd_py34    https://pergamon.cs.nsls2.local:8443/conda/nsls2-dev
pandas                    0.17.1              np110py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
path.py                   8.1.2                    py34_1    https://pergamon.cs.nsls2.local:8443/conda/anaconda
pexpect                   3.3                      py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
pickleshare               0.5                      py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
pillow                    3.0.0                    py34_1    https://pergamon.cs.nsls2.local:8443/conda/anaconda
pims                      0.3.3.post23    23_g818094d_py34    https://pergamon.cs.nsls2.local:8443/conda/nsls2-dev
pip                       9.0.1                    pypi_0    pypi
prettytable               0.7.2                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/nsls2
ptyprocess                0.5                      py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
pyasn1                    0.1.9                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
pyepics                   3.2.6                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/nsls2-tag
pygments                  2.0.2                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
pymongo                   3.2.1.post0     0_g22fd629_py34    https://pergamon.cs.nsls2.local:8443/conda/nsls2-dev
pyolog                    4.0.0.post5+g1a24409          py34_0    https://pergamon.cs.nsls2.local:8443/conda/nsls2
pyparsing                 2.0.3                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
pyqt                      4.11.4                   py34_1    https://pergamon.cs.nsls2.local:8443/conda/anaconda
python                    3.4.5                         0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
python-dateutil           2.4.2                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
pytz                      2015.7                   py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
pyyaml                    3.11                     py34_1    https://pergamon.cs.nsls2.local:8443/conda/anaconda
pyzmq                     15.1.0                   py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
qt                        4.8.7                         1    https://pergamon.cs.nsls2.local:8443/conda/anaconda
readline                  6.2                          12    https://pergamon.cs.nsls2.local:8443/conda/nsls2
requests                  2.9.0                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
scikit-image              0.11.3              np110py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
scipy                     0.16.1              np110py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
setuptools                19.1.1                   py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
simplegeneric             0.8.1                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
sip                       4.16.9                   py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
six                       1.10.0                   py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
slicerator                0.9.7.post0     0_g837e7d5_py34    https://pergamon.cs.nsls2.local:8443/conda/nsls2-dev
sqlite                    3.13.0                        0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
super_state_machine       1.0                      py34_0    https://pergamon.cs.nsls2.local:8443/conda/nsls2
terminado                 0.5                      py34_1    https://pergamon.cs.nsls2.local:8443/conda/anaconda
tifffile                  0.3.1               np110py34_0    https://pergamon.cs.nsls2.local:8443/conda/nsls2
tk                        8.5.18                        0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
tornado                   4.3                      py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
traitlets                 4.0.0                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
tzlocal                   1.1.2                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/nsls2
ujson                     1.35                     py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
wheel                     0.26.0                   py34_1    https://pergamon.cs.nsls2.local:8443/conda/anaconda
xlrd                      1.0.0                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
xmltodict                 0.10.1                   pypi_0    pypi
xray-vision               0.0.5                    py34_0    https://pergamon.cs.nsls2.local:8443/conda/nsls2-tag
xz                        5.2.2                         0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
yaml                      0.1.6                         0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
zeromq                    4.1.3                         0    https://pergamon.cs.nsls2.local:8443/conda/anaconda
zlib                      1.2.8                         0    https://pergamon.cs.nsls2.local:8443/conda/anaconda