search

NSLS-II / nslsii

NSLS-II related devices
BSD 3-Clause "New" or "Revised" License
10 stars 22 forks source link

gcc related package installed issue with solution #56

Open ke-zhang-rd opened 5 years ago

ke-zhang-rd commented 5 years ago

Issue

$ pip install -e .
Obtaining file:///Users/kz2249/nslsii
Requirement already satisfied: bluesky in /Users/kz2249/bluesky (from nslsii==0.0.6+53.g5dbb1ff.dirty) (1.5.0.post6.dev0+g9069d573)
Requirement already satisfied: caproto in /Users/kz2249/caproto (from nslsii==0.0.6+53.g5dbb1ff.dirty) (0.3.0+10.gc00f4a63)
Requirement already satisfied: databroker in /Users/kz2249/databroker (from nslsii==0.0.6+53.g5dbb1ff.dirty) (0.11.2rc1.post2+gfc035b3)
Requirement already satisfied: ipython in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from nslsii==0.0.6+53.g5dbb1ff.dirty) (6.5.0)
Collecting ipywidgets (from nslsii==0.0.6+53.g5dbb1ff.dirty)
  Using cached https://files.pythonhosted.org/packages/30/9a/a008c7b1183fac9e52066d80a379b3c64eab535bd9d86cdc29a0b766fd82/ipywidgets-7.4.2-py2.py3-none-any.whl
Requirement already satisfied: matplotlib in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from nslsii==0.0.6+53.g5dbb1ff.dirty) (3.0.2)
Requirement already satisfied: numpy in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from nslsii==0.0.6+53.g5dbb1ff.dirty) (1.15.4)
Requirement already satisfied: ophyd in /Users/kz2249/ophyd (from nslsii==0.0.6+53.g5dbb1ff.dirty) (1.3.0.post167.dev0+g39811f6)
Collecting psutil (from nslsii==0.0.6+53.g5dbb1ff.dirty)
  Downloading https://files.pythonhosted.org/packages/2f/b8/11ec5006d2ec2998cb68349b8d1317c24c284cf918ecd6729739388e4c56/psutil-5.6.1.tar.gz (427kB)
    100% |████████████████████████████████| 430kB 6.9MB/s 
Collecting pyolog (from nslsii==0.0.6+53.g5dbb1ff.dirty)
  Downloading https://files.pythonhosted.org/packages/6d/6e/78346a1f160a3054bb7c42e74034a6d76d1cebe3171f5eb686012a3f6052/pyOlog-4.4.2-py3-none-any.whl
Requirement already satisfied: requests in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from nslsii==0.0.6+53.g5dbb1ff.dirty) (2.19.1)
Requirement already satisfied: cycler in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from bluesky->nslsii==0.0.6+53.g5dbb1ff.dirty) (0.10.0)
Requirement already satisfied: event-model>=1.5.0 in /Users/kz2249/event-model (from bluesky->nslsii==0.0.6+53.g5dbb1ff.dirty) (1.6.0+12.g3bf2d0c)
Requirement already satisfied: historydict in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from bluesky->nslsii==0.0.6+53.g5dbb1ff.dirty) (1.2.1)
Requirement already satisfied: jsonschema in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from bluesky->nslsii==0.0.6+53.g5dbb1ff.dirty) (2.6.0)
Requirement already satisfied: super_state_machine in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from bluesky->nslsii==0.0.6+53.g5dbb1ff.dirty) (2.0.2)
Requirement already satisfied: toolz in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from bluesky->nslsii==0.0.6+53.g5dbb1ff.dirty) (0.9.0)
Requirement already satisfied: tqdm in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from bluesky->nslsii==0.0.6+53.g5dbb1ff.dirty) (4.22.0)
Requirement already satisfied: attrs in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from databroker->nslsii==0.0.6+53.g5dbb1ff.dirty) (18.1.0)
Requirement already satisfied: boltons in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from databroker->nslsii==0.0.6+53.g5dbb1ff.dirty) (18.0.0)
Requirement already satisfied: dask in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from databroker->nslsii==0.0.6+53.g5dbb1ff.dirty) (0.17.2)
Requirement already satisfied: doct in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from databroker->nslsii==0.0.6+53.g5dbb1ff.dirty) (1.0.5)
Requirement already satisfied: humanize in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from databroker->nslsii==0.0.6+53.g5dbb1ff.dirty) (0.5.1)
Requirement already satisfied: jinja2 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from databroker->nslsii==0.0.6+53.g5dbb1ff.dirty) (2.10)
Requirement already satisfied: mongoquery in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from databroker->nslsii==0.0.6+53.g5dbb1ff.dirty) (1.3.3)
Requirement already satisfied: pandas in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from databroker->nslsii==0.0.6+53.g5dbb1ff.dirty) (0.23.4)
Requirement already satisfied: pims in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from databroker->nslsii==0.0.6+53.g5dbb1ff.dirty) (0.4.1)
Requirement already satisfied: pytz in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from databroker->nslsii==0.0.6+53.g5dbb1ff.dirty) (2018.5)
Requirement already satisfied: pyyaml in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from databroker->nslsii==0.0.6+53.g5dbb1ff.dirty) (3.12)
Requirement already satisfied: six in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from databroker->nslsii==0.0.6+53.g5dbb1ff.dirty) (1.11.0)
Requirement already satisfied: tifffile in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from databroker->nslsii==0.0.6+53.g5dbb1ff.dirty) (0.14.0)
Requirement already satisfied: tzlocal in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from databroker->nslsii==0.0.6+53.g5dbb1ff.dirty) (1.5.1)
Requirement already satisfied: traitlets>=4.2 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from ipython->nslsii==0.0.6+53.g5dbb1ff.dirty) (4.3.2)
Requirement already satisfied: jedi>=0.10 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from ipython->nslsii==0.0.6+53.g5dbb1ff.dirty) (0.12.1)
Requirement already satisfied: backcall in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from ipython->nslsii==0.0.6+53.g5dbb1ff.dirty) (0.1.0)
Requirement already satisfied: pexpect; sys_platform != "win32" in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from ipython->nslsii==0.0.6+53.g5dbb1ff.dirty) (4.6.0)
Requirement already satisfied: appnope; sys_platform == "darwin" in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from ipython->nslsii==0.0.6+53.g5dbb1ff.dirty) (0.1.0)
Requirement already satisfied: prompt-toolkit<2.0.0,>=1.0.15 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from ipython->nslsii==0.0.6+53.g5dbb1ff.dirty) (1.0.15)
Requirement already satisfied: simplegeneric>0.8 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from ipython->nslsii==0.0.6+53.g5dbb1ff.dirty) (0.8.1)
Requirement already satisfied: pickleshare in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from ipython->nslsii==0.0.6+53.g5dbb1ff.dirty) (0.7.4)
Requirement already satisfied: pygments in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from ipython->nslsii==0.0.6+53.g5dbb1ff.dirty) (2.2.0)
Requirement already satisfied: decorator in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from ipython->nslsii==0.0.6+53.g5dbb1ff.dirty) (4.3.0)
Requirement already satisfied: setuptools>=18.5 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from ipython->nslsii==0.0.6+53.g5dbb1ff.dirty) (40.5.0)
Requirement already satisfied: ipykernel>=4.5.1 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from ipywidgets->nslsii==0.0.6+53.g5dbb1ff.dirty) (5.1.0)
Collecting widgetsnbextension~=3.4.0 (from ipywidgets->nslsii==0.0.6+53.g5dbb1ff.dirty)
  Using cached https://files.pythonhosted.org/packages/8a/81/35789a3952afb48238289171728072d26d6e76649ddc8b3588657a2d78c1/widgetsnbextension-3.4.2-py2.py3-none-any.whl
Requirement already satisfied: nbformat>=4.2.0 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from ipywidgets->nslsii==0.0.6+53.g5dbb1ff.dirty) (4.4.0)
Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from matplotlib->nslsii==0.0.6+53.g5dbb1ff.dirty) (2.2.0)
Requirement already satisfied: python-dateutil>=2.1 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from matplotlib->nslsii==0.0.6+53.g5dbb1ff.dirty) (2.7.3)
Requirement already satisfied: kiwisolver>=1.0.1 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from matplotlib->nslsii==0.0.6+53.g5dbb1ff.dirty) (1.0.1)
Requirement already satisfied: networkx>=2.0 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from ophyd->nslsii==0.0.6+53.g5dbb1ff.dirty) (2.1)
Requirement already satisfied: pyepics in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from ophyd->nslsii==0.0.6+53.g5dbb1ff.dirty) (3.3.1)
Requirement already satisfied: idna<2.8,>=2.5 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from requests->nslsii==0.0.6+53.g5dbb1ff.dirty) (2.7)
Requirement already satisfied: certifi>=2017.4.17 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from requests->nslsii==0.0.6+53.g5dbb1ff.dirty) (2018.11.29)
Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from requests->nslsii==0.0.6+53.g5dbb1ff.dirty) (3.0.4)
Requirement already satisfied: urllib3<1.24,>=1.21.1 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from requests->nslsii==0.0.6+53.g5dbb1ff.dirty) (1.23)
Requirement already satisfied: prettytable in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from doct->databroker->nslsii==0.0.6+53.g5dbb1ff.dirty) (0.7.2)
Requirement already satisfied: MarkupSafe>=0.23 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from jinja2->databroker->nslsii==0.0.6+53.g5dbb1ff.dirty) (1.0)
Requirement already satisfied: slicerator>=0.9.7 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from pims->databroker->nslsii==0.0.6+53.g5dbb1ff.dirty) (0.9.8)
Requirement already satisfied: ipython_genutils in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from traitlets>=4.2->ipython->nslsii==0.0.6+53.g5dbb1ff.dirty) (0.2.0)
Requirement already satisfied: parso>=0.3.0 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from jedi>=0.10->ipython->nslsii==0.0.6+53.g5dbb1ff.dirty) (0.3.1)
Requirement already satisfied: ptyprocess>=0.5 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from pexpect; sys_platform != "win32"->ipython->nslsii==0.0.6+53.g5dbb1ff.dirty) (0.6.0)
Requirement already satisfied: wcwidth in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from prompt-toolkit<2.0.0,>=1.0.15->ipython->nslsii==0.0.6+53.g5dbb1ff.dirty) (0.1.7)
Requirement already satisfied: jupyter_client in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from ipykernel>=4.5.1->ipywidgets->nslsii==0.0.6+53.g5dbb1ff.dirty) (5.2.4)
Requirement already satisfied: tornado>=4.2 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from ipykernel>=4.5.1->ipywidgets->nslsii==0.0.6+53.g5dbb1ff.dirty) (4.5.2)
Collecting notebook>=4.4.1 (from widgetsnbextension~=3.4.0->ipywidgets->nslsii==0.0.6+53.g5dbb1ff.dirty)
  Downloading https://files.pythonhosted.org/packages/0a/d8/4e9521354ed3d730ba6d8a5af440b66c73245ef46be706e51bead71afc21/notebook-5.7.6-py2.py3-none-any.whl (9.0MB)
    100% |████████████████████████████████| 9.0MB 3.1MB/s 
Requirement already satisfied: jupyter_core in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from nbformat>=4.2.0->ipywidgets->nslsii==0.0.6+53.g5dbb1ff.dirty) (4.4.0)
Requirement already satisfied: pyzmq>=13 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from jupyter_client->ipykernel>=4.5.1->ipywidgets->nslsii==0.0.6+53.g5dbb1ff.dirty) (17.1.0)
Requirement already satisfied: prometheus-client in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets->nslsii==0.0.6+53.g5dbb1ff.dirty) (0.3.1)
Requirement already satisfied: Send2Trash in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets->nslsii==0.0.6+53.g5dbb1ff.dirty) (1.5.0)
Requirement already satisfied: terminado>=0.8.1 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets->nslsii==0.0.6+53.g5dbb1ff.dirty) (0.8.1)
Collecting nbconvert (from notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets->nslsii==0.0.6+53.g5dbb1ff.dirty)
  Downloading https://files.pythonhosted.org/packages/b8/39/1e67fea74dc9577cc49f9863fe3ec824e525d1304ab6027d95a94cd586f5/nbconvert-5.4.1-py2.py3-none-any.whl (407kB)
    100% |████████████████████████████████| 409kB 7.2MB/s 
Requirement already satisfied: testpath in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets->nslsii==0.0.6+53.g5dbb1ff.dirty) (0.3.1)
Requirement already satisfied: defusedxml in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets->nslsii==0.0.6+53.g5dbb1ff.dirty) (0.5.0)
Requirement already satisfied: bleach in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets->nslsii==0.0.6+53.g5dbb1ff.dirty) (2.1.3)
Requirement already satisfied: pandocfilters>=1.4.1 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets->nslsii==0.0.6+53.g5dbb1ff.dirty) (1.4.2)
Requirement already satisfied: entrypoints>=0.2.2 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets->nslsii==0.0.6+53.g5dbb1ff.dirty) (0.3)
Requirement already satisfied: mistune>=0.8.1 in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets->nslsii==0.0.6+53.g5dbb1ff.dirty) (0.8.3)
Requirement already satisfied: html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from bleach->nbconvert->notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets->nslsii==0.0.6+53.g5dbb1ff.dirty) (1.0.1)
Requirement already satisfied: webencodings in /Users/kz2249/miniconda3/envs/py3/lib/python3.6/site-packages (from html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre->bleach->nbconvert->notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets->nslsii==0.0.6+53.g5dbb1ff.dirty) (0.5.1)
Building wheels for collected packages: psutil
  Building wheel for psutil (setup.py) ... error
  Complete output from command /Users/kz2249/miniconda3/envs/py3/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/b9/sd0d6xvd5tq7k8zt120mrhsr0000gn/T/pip-install-ngft3qsn/psutil/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /private/var/folders/b9/sd0d6xvd5tq7k8zt120mrhsr0000gn/T/pip-wheel-qukpwrrq --python-tag cp36:
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.macosx-10.7-x86_64-3.6
  creating build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_common.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_compat.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_psaix.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_psbsd.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_pslinux.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_psosx.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_psposix.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_pssunos.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_pswindows.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  creating build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/__main__.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_aix.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_bsd.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_connections.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_contracts.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_linux.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_memory_leaks.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_misc.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_osx.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_posix.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_process.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_sunos.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_system.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_unicode.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_windows.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  running build_ext
  building 'psutil._psutil_osx' extension
  creating build/temp.macosx-10.7-x86_64-3.6
  creating build/temp.macosx-10.7-x86_64-3.6/psutil
  creating build/temp.macosx-10.7-x86_64-3.6/psutil/arch
  creating build/temp.macosx-10.7-x86_64-3.6/psutil/arch/osx
  gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/kz2249/miniconda3/envs/py3/include -arch x86_64 -I/Users/kz2249/miniconda3/envs/py3/include -arch x86_64 -DPSUTIL_POSIX=1 -DPSUTIL_VERSION=561 -DPSUTIL_OSX=1 -I/Users/kz2249/miniconda3/envs/py3/include/python3.6m -c psutil/_psutil_common.c -o build/temp.macosx-10.7-x86_64-3.6/psutil/_psutil_common.o
  FATAL:/opt/local/bin/../libexec/as/x86_64/as: I don't understand 'm' flag!
  error: command 'gcc' failed with exit status 1

  ----------------------------------------
  Failed building wheel for psutil
  Running setup.py clean for psutil
Failed to build psutil
Installing collected packages: nbconvert, notebook, widgetsnbextension, ipywidgets, psutil, pyolog, nslsii
  Running setup.py install for psutil ... error
    Complete output from command /Users/kz2249/miniconda3/envs/py3/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/b9/sd0d6xvd5tq7k8zt120mrhsr0000gn/T/pip-install-ngft3qsn/psutil/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /private/var/folders/b9/sd0d6xvd5tq7k8zt120mrhsr0000gn/T/pip-record-gjus6ew6/install-record.txt --single-version-externally-managed --compile:
    running install
    running build
    running build_py
    creating build
    creating build/lib.macosx-10.7-x86_64-3.6
    creating build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_common.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_compat.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_psaix.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_psbsd.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_pslinux.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_psosx.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_psposix.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_pssunos.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_pswindows.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    creating build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/__main__.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_aix.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_bsd.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_connections.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_contracts.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_linux.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_memory_leaks.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_misc.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_osx.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_posix.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_process.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_sunos.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_system.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_unicode.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_windows.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    running build_ext
    building 'psutil._psutil_osx' extension
    creating build/temp.macosx-10.7-x86_64-3.6
    creating build/temp.macosx-10.7-x86_64-3.6/psutil
    creating build/temp.macosx-10.7-x86_64-3.6/psutil/arch
    creating build/temp.macosx-10.7-x86_64-3.6/psutil/arch/osx
    gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/kz2249/miniconda3/envs/py3/include -arch x86_64 -I/Users/kz2249/miniconda3/envs/py3/include -arch x86_64 -DPSUTIL_POSIX=1 -DPSUTIL_VERSION=561 -DPSUTIL_OSX=1 -I/Users/kz2249/miniconda3/envs/py3/include/python3.6m -c psutil/_psutil_common.c -o build/temp.macosx-10.7-x86_64-3.6/psutil/_psutil_common.o
    FATAL:/opt/local/bin/../libexec/as/x86_64/as: I don't understand 'm' flag!
    error: command 'gcc' failed with exit status 1

    ----------------------------------------
Command "/Users/kz2249/miniconda3/envs/py3/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/b9/sd0d6xvd5tq7k8zt120mrhsr0000gn/T/pip-install-ngft3qsn/psutil/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /private/var/folders/b9/sd0d6xvd5tq7k8zt120mrhsr0000gn/T/pip-record-gjus6ew6/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/var/folders/b9/sd0d6xvd5tq7k8zt120mrhsr0000gn/T/pip-install-ngft3qsn/psutil/
You are using pip version 19.0.1, however version 19.0.3 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.

Solution

$ gcc -v
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/opt/local/libexec/gcc/x86_64-apple-darwin16/8.2.0/lto-wrapper
Target: x86_64-apple-darwin16
Configured with: /opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_lang_gcc8/gcc8/work/gcc-8.2.0/configure --prefix=/opt/local --build=x86_64-apple-darwin16 --enable-languages=c,c++,objc,obj-c++,lto,fortran --libdir=/opt/local/lib/gcc8 --includedir=/opt/local/include/gcc8 --infodir=/opt/local/share/info --mandir=/opt/local/share/man --datarootdir=/opt/local/share/gcc-8 --with-local-prefix=/opt/local --with-system-zlib --disable-nls --program-suffix=-mp-8 --with-gxx-include-dir=/opt/local/include/gcc8/c++/ --with-gmp=/opt/local --with-mpfr=/opt/local --with-mpc=/opt/local --with-isl=/opt/local --enable-stage1-checking --disable-multilib --enable-lto --enable-libstdcxx-time --with-build-config=bootstrap-debug --with-as=/opt/local/bin/as --with-ld=/opt/local/bin/ld --with-ar=/opt/local/bin/ar --with-bugurl=https://trac.macports.org/newticket --disable-tls --with-pkgversion='MacPorts gcc8 8.2.0_0'
Thread model: posix
gcc version 8.2.0 (MacPorts gcc8 8.2.0_0) 
$ port select --list gcc
Warning: port definitions are more than two weeks old, consider updating them by running 'port selfupdate'.
Available versions for gcc:
    mp-gcc8 (active)
    none
$ sudo port select --set gcc none
Password:
Warning: port definitions are more than two weeks old, consider updating them by running 'port selfupdate'.
Selecting 'none' for 'gcc' succeeded. 'none' is now active.