NMEDW Request 5038 (Seth Pollack): Sarcoma patients with specific histologies:

mgurley commented 2 months ago

Undifferentiated pleomorphic sarcoma (15 cases)
Dedifferentiated Liposarcoma (15 cases)
Leiomyosarcoma (15 cases)
Synovial sarcoma (8 cases)
Desmoplastic small round cell tumors (8 cases)
Angiosarcoma (8 cases)
Malignant peripheral nerve sheath tumors(MPNST) (8 cases)
Ewing sarcoma (8 cases)
Osteosarcoma (8 cases)

Pathology accession numbers (to be released to the Pathology Core Facility) to request from the CSRC. Associated clinical data requesting to be released. A detailed data dictionary is available. Cancer History Pathology Surgery Anti-neoplastic Systemic Treatments Radiation Treatments Imaging Exam Reports Disease Status Genomic Results Survival/Death

PerifanosPrometheus commented 1 month ago

Report was completed. We are now going forward with the process to ask Pathcore to search for the specimens and provide them to researchers.

PerifanosPrometheus commented 1 month ago

https://jira.fsm.northwestern.edu/browse/RW-5245?filter=-1&jql=assignee%20in%20(currentUser())%20order%20by%20updated%20DESC

mgurley commented 4 weeks ago

We want to add the NM hospital to this report to make it easy for PathCore to prioritize NMH cases over non-NMH cases. Also remove the headers from the report so opening it to Excel is not so annoying.

mgurley commented 1 week ago

Based on feedback from Gabriel/Dr. Pollack, we might move to pulling cases from 2021 on to have quicker access. We need to check synoptic data for this.

mgurley commented 1 week ago

2021 counts were provided to study team. Waiting on feedback to expand date range on report.

NU-QDSC / cancer-informatics

NMEDW Request 5038 (Seth Pollack): Sarcoma patients with specific histologies: #169