NU-QDSC / cancer-informatics

Repository to track cancer informatics best practices and shared code.
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Map the clinical trial accrual data to the Cancer In Focus high-level cancer types based on the same logic used for the NM tumor registry volume. #184

Closed mgurley closed 3 weeks ago

mgurley commented 5 months ago

NOTIS does not support mapping its disease sites to histologies. The long-term solution will be to support that. A ticket will be created in NOTIS-RAILS tracker. In the interim, we will have to manually map the NOTIS disease site names for HEME cancers to histologies to make the mapping logic work.

mgurley commented 5 months ago

Add the support in NOTIS for multiple namespace mappings for clinical trails accrual:

Also, add support for mapping ICD-O-3 histologies as well as topographies.

PerifanosPrometheus commented 5 months ago

Added column with disease site to notis accrual. Now needing to implement the mapping.

PerifanosPrometheus commented 4 months ago

Notes from COE meeting:

PerifanosPrometheus commented 2 months ago

Confirm with CTO that for the NOTIS accrual we can use the same dataset used for the dashboard sent out to disease teams every month.

If so, we can update the view notis-treating-physician-accrual to have the column with the mapping. In the meantime, I can do the mapping manually based on the view data.

PerifanosPrometheus commented 2 months ago

Daniel is obtaining this data from the report called 'geodata'. We can use that and update the disease site mapping on there.

At the same time, it's probably consolidating both the accrual provided to daniel(via geodata) and the dataflow used to powerBI dashboard for disease team accruals into a single code rather than maintaining two separate ones.

mgurley commented 1 month ago

The new mappings of Disease Sites to Cancer InFoucs groups have been implemented in NOTIS and loaded into the NMEDW. Update the extract for Cancer InFoucs to use these new mappings.