Our .gtf file (gencode gtf) has multiple gene IDs mapping to the same gene symbol. For example,
ENSG00000284934.1 DIABLO
ENSG00000184047.19 DIABLO
However, DegNorm output file combines both IDs and generates adjusted counts for DIABLO gene rather than both IDs. Is it possible to obtain adjusted counts per gene ID?```
GenomeAnnotationLoader
is currently prioritizinggene_name
overgene_id
(https://github.com/NUStatBioinfo/DegNorm/blob/master/degnorm/loaders.py#L151)In response to user comment