Open paawanpoudel opened 3 years ago
Hi, I am trying to run Degnorm on ~19 samples (size of 1 bam file =11 GB) and the script gives me the following error message:
Loading required package: DegNorm Registered S3 method overwritten by 'seriation': method from reorder.hclust gclus Warning message: replacing previous import ‘vctrs::data_frame’ by ‘tibble::data_frame’ when loading ‘dplyr’ Error in unserialize(socklist[[n]]) : error reading from connection Calls: ... recvOneData -> recvOneData.SOCKcluster -> unserialize Execution halted
Here is the command I used:
coverage_res <- DegNorm::read_coverage_batch( bam_files, gtf_file, cores = n_cores )
Any comments from you would be really helpful.
Hi, I am trying to run Degnorm on ~19 samples (size of 1 bam file =11 GB) and the script gives me the following error message:
Loading required package: DegNorm Registered S3 method overwritten by 'seriation': method from reorder.hclust gclus Warning message: replacing previous import ‘vctrs::data_frame’ by ‘tibble::data_frame’ when loading ‘dplyr’ Error in unserialize(socklist[[n]]) : error reading from connection Calls: ... recvOneData -> recvOneData.SOCKcluster -> unserialize
Execution halted
Here is the command I used:
estimating the gene specific coverage
coverage_res <- DegNorm::read_coverage_batch( bam_files, gtf_file, cores = n_cores )
Any comments from you would be really helpful.