NVIDIA-Genomics-Research / AtacWorks

Deep learning based processing of Atac-seq data
https://clara-parabricks.github.io/AtacWorks/
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WIP: Add detailed help. #110

Closed ntadimeti closed 4 years ago

ntadimeti commented 4 years ago

Add detailed help to command line options. This will prevent the need to add extra documentation somewhere else.

ntadimeti commented 4 years ago

@avantikalal and @tijyojwad can you tell me what options need highlighting ? From a quick glance, the current help looks pretty self explanatory to me.

tijyojwad commented 4 years ago

@ntadimeti check out https://docs.python.org/2/library/argparse.html#sub-commands . The subparser concept can be used to better organize the help messages between train, eeval and infer

ntadimeti commented 4 years ago

Will open a fresh PR that re-organizes the commands. Avantika has another PR that adds help where needed.