WIP: Parse tutorials and test the code snippets

NVIDIA-Genomics-Research / AtacWorks

Deep learning based processing of Atac-seq data

https://clara-parabricks.github.io/AtacWorks/

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WIP: Parse tutorials and test the code snippets #157

Closed ntadimeti closed 4 years ago

ntadimeti commented 4 years ago

An attempt at parsing tutorial files and creating automated tests to catch any breaking changes.

-> This does not test to make sure "expected" files are generated. I'm not sure of an automated way to extract those file names from the tutorials currently. -> These tests will increase the CI time as the data is big.

TODO: Change the train config right before testing to only run 1 epoch.

ntadimeti commented 4 years ago

Closing this PR, since we decided to convert tutorials into jupyter notebook.