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NVIDIA-Genomics-Research / AtacWorks

Deep learning based processing of Atac-seq data
https://clara-parabricks.github.io/AtacWorks/
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Alal/write binned #178

Closed avantikalal closed 4 years ago

avantikalal commented 4 years ago

  1. Allows binning of Atacworks output (currently by taking the average score over a bin). This saves time by writing at lower resolution and allows AtacWorks output to be used in workflows which expect binned files.

  2. Corrected an error in writing args.interval_size to output infer_config.yaml - padding should be subtracted in calculating the interval size.

ntadimeti commented 4 years ago

Have you tested this ? @avantikalal . Can we add a quick end-to-end test for this feature ?