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NVIDIA-Genomics-Research / AtacWorks

Deep learning based processing of Atac-seq data
https://clara-parabricks.github.io/AtacWorks/
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Convert scripts to modules #184

Closed ntadimeti closed 4 years ago

ntadimeti commented 4 years ago

This PR :

  1. modularizes pre-processing steps.
  2. Updates tests to reflect that.

Note: Currently, inference only supports taking in whole genome. This is a side effect of modularization. We need to expose another parameter to enable user to specify regions to infer, it will be done is a separate PR.