Closed hugokitano closed 4 years ago
These files are available here: https://atacworks-paper.s3.us-east-2.amazonaws.com/dsc_atac_blood_cell_denoising_experiments/50_cells/output/NK_inf.wg.peaks.bw https://atacworks-paper.s3.us-east-2.amazonaws.com/dsc_atac_blood_cell_denoising_experiments/50_cells/output/NK_inf.wg.track.bw
However, the peaks.bw file here was created using the alternate inference command in Appendix 1 of the tutorial. So it contains the probability of each base being part of a peak. You can use it to generate peak calls with different probability thresholds using MACS2 as described in the tutorial.
Is it possible that we can download the outputs of the Tutorial 2 output? I'd like to take a look at them before I start running a GPU. Thanks!
Hugo