Removing hard-set versions from requirements.txt to be more compatible with RAPIDS

NVIDIA-Genomics-Research / AtacWorks

Deep learning based processing of Atac-seq data

https://clara-parabricks.github.io/AtacWorks/

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Removing hard-set versions from requirements.txt to be more compatible with RAPIDS #245

Open cjnolet opened 3 years ago

cjnolet commented 3 years ago

I'm currently updating the rapids-single-cell-examples repository to use RAPIDS 21.08 but the firm versions in the atacworks python package are causing numerous conflicts with the rest of the packages in the ecosystem. I propose we remove the hard-set versions since, as far as I can tell, nothing in this repository requires them. If we do that there are version issues over time, we should consider setting bounds with ranges instead of locking to an exact version.

edawson commented 1 year ago

I agree these shouldn't be fixed to specific versions and should eventually be a range, but can we use a ">=" semantic instead as a start?

Very much looking forward to seeing this get repaired and released!

cjnolet commented 1 year ago

@edawson I made the requested change and verified that the environment still works after building.