search

NVIDIA-Genomics-Research / GenomeWorks

SDK for GPU accelerated genome assembly and analysis
https://clara-parabricks.github.io/GenomeWorks/
Apache License 2.0
286 stars 76 forks source link

[cudamapper] Skip pairs of indices which cause out of memory errors #489

Closed mimaric closed 4 years ago

mimaric commented 4 years ago

Depending on read characteristics some pairs of indices can cause OOM errors. Skip such pairs of indices and print a message to the user.

mimaric commented 4 years ago

@edawson FYI