NVIDIA-Genomics-Research / GenomeWorks

SDK for GPU accelerated genome assembly and analysis
https://clara-parabricks.github.io/GenomeWorks/
Apache License 2.0
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[cudamapper] Process skipped pairs of indices separately #490

Open mimaric opened 4 years ago

mimaric commented 4 years ago

Keep a list of pairs of indices which were skipped due to an OOM error (Issue #489). Once all other pairs of indices have been processed go over skipped ones and process them one by one without keeping any other indices on device in order to maximize the amount of available device memory.