[cudamapper] Split index pairs which cause OOM into multiple pairs of indices

NVIDIA-Genomics-Research / GenomeWorks

SDK for GPU accelerated genome assembly and analysis

https://clara-parabricks.github.io/GenomeWorks/

Apache License 2.0

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[cudamapper] Split index pairs which cause OOM into multiple pairs of indices #491

Open mimaric opened 4 years ago

mimaric commented 4 years ago

If a pair of indices causes OOM error even when no other indices are kept on device (Issue #490, also see #489) split indices into several smaller indices and find overlaps.