[cudapoa] unify CUDA kernels in banded and adaptive NW

NVIDIA-Genomics-Research / GenomeWorks

SDK for GPU accelerated genome assembly and analysis

https://clara-parabricks.github.io/GenomeWorks/

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[cudapoa] unify CUDA kernels in banded and adaptive NW #522

Closed r-mafi closed 4 years ago

r-mafi commented 4 years ago

there are multiple kernels in cudapoa_nw_banded.cuh and cudapoa_nw_adaptive_banded.cuh which are similar and with some effort can be unified and combined together. Merge them and have them in a separate file, such as banded_nw_utils.cuh