NVIDIA-Genomics-Research / GenomeWorks

SDK for GPU accelerated genome assembly and analysis
https://clara-parabricks.github.io/GenomeWorks/
Apache License 2.0
286 stars 76 forks source link

[cudapoa] consolidate macros for banded alignment in single header #528

Open tijyojwad opened 4 years ago

tijyojwad commented 4 years ago

Right now the macros for banded alignment like CUDAPOA_BANDED_MATRIX_RIGHT_PADDING are not shared between the kernel code and other sources that determine sizes for bands (such as in batch.cu). For now they're hard coded to specific numbers, but this is error prone. This needs to be fixed to the macros are shared between files.