NVIDIA-Genomics-Research / GenomeWorks

SDK for GPU accelerated genome assembly and analysis
https://clara-parabricks.github.io/GenomeWorks/
Apache License 2.0
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Anchmer experimentation #548

Closed edawson closed 3 years ago

edawson commented 4 years ago

Implements a variety of seeding / chaining techniques in an attempt to improve accuracy in repetitive regions of genomes. Currently incorporates new algorithms as well as techniques derived from (https://vast.cs.ucla.edu/sites/default/files/publications/minimap2-acc-approved.pdf).