IndexGPU was segfaulting when passed reads that are shorter than one full window (window_size_ + kmer_size_ - 1). This was not exposed because parser already filters out such reads, but this adds an additional level of robustness.
IndexGPU was making an unnecessary copy of reads in fasta_reads which had a measurable performance cost.
IndexGPUwas segfaulting when passed reads that are shorter than one full window (window_size_ + kmer_size_ - 1). This was not exposed because parser already filters out such reads, but this adds an additional level of robustness.IndexGPUwas making an unnecessary copy of reads infasta_readswhich had a measurable performance cost.