NVIDIA-Genomics-Research / GenomeWorks

SDK for GPU accelerated genome assembly and analysis
https://clara-parabricks.github.io/GenomeWorks/
Apache License 2.0
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[cudapoa] Unify NW kernels #581

Closed r-mafi closed 3 years ago

r-mafi commented 3 years ago

over time, numerous versions of Needleman-Wunsch algorithm for different banding modes have been developed. In this PR, we unify adaptive-banded and static-banded versions into a same device kernel. other changes:

r-mafi commented 3 years ago

rerun tests

r-mafi commented 3 years ago

rerun tests

ohadmo commented 3 years ago

rerun tests

ohadmo commented 3 years ago

rerun tests