Closed tijyojwad closed 3 years ago
@o8191 Can you have a look at why the CentOS 7 job failed? Appears to be an issue with installing lumpy, but that seems odd...
@o8191 Can you have a look at why the CentOS 7 job failed? Appears to be an issue with installing lumpy, but that seems odd...
It seems this issue started to happen since we updated our images in docker hub, we can see this in the nightly builds: https://gpuci.gpuopenanalytics.com/job/clara-genomics/job/gpuci/job/clara-genomics-analysis/job/branches/job/clara-genomics-analysis-branch-pipeline/ I'm looking into it
centos7
failed test is resolved in https://github.com/clara-parabricks/gpuci-build-environment/pull/11ubuntu16.04-cuda9.0
test is due to us using Python 3.5 in that image (which we dropped the support and doesn't have this matplotlib version available in PyPI) and should be resolved once we merge the new configuration in https://github.com/rapidsai/gpuci-scripts/pull/313/files#diff-6d26146b48f1462a5b5108bd0506660b6869472d60cfdf75e66c139f534c2e68L79 rerun tests
adding a small tool to visualize cigar strings for pairwise alignments