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NVIDIA-Genomics-Research / GenomeWorks

SDK for GPU accelerated genome assembly and analysis
https://clara-parabricks.github.io/GenomeWorks/
Apache License 2.0
286 stars 76 forks source link

[pygenomeworks] pinned dependencies. #647

Closed iiSeymour closed 3 years ago

iiSeymour commented 3 years ago

Hey all,

I'm looking to depend on genomeworks-cuda-10-2 in bonito but the current set of pinned dependencies are too restrictive.

Specifically, the troubles are with the requirement on numpy==1.16.3 and the use of h5py and cupy.

iiSeymour commented 3 years ago

@ohadmo I've tested 2021.2.2 with bonito using py3.{6,7,8} and can confirm #650 has done the trick, thank you for sorting this.