Closed dominik-handler closed 3 years ago
Hi Dominik! The error message is not that explicit, but given your success with gcc8, my guess is that the issue is a cuda/gcc incompatibility problem. What distribution are you using for your builds and what version of CUDA do they include?
Hi Dominik. Did you build with make -j ...
?
If so, could you try to run make
in the build directory again without any arguments? I guess the actual error happened further up.
Hi,
I am sorry but I cannot reproduce the error anymore. I now tried various variants of CUDA and gcc together and all of them build at the moment.
Thank you in any case, Dominik
No worries. The best issues are the ones that solve themselves. :)
Hi,
I tried to build racon and as part of it genomeworks is built. Per default I had gcc9.3 installed and the build of GenomeWorks failed. When I tried to build it separately from racon I had the same problem. I was able to install it nicely when switching back to gcc8.
I got this error message: 09:55:56 [ 36%] Building CXX object cudaaligner/CMakeFiles/cudaaligner.dir/src/cudaaligner.cpp.o 09:55:56 [ 36%] Building CXX object cudaaligner/CMakeFiles/cudaaligner.dir/src/aligner_global_ukkonen.cpp.o 09:55:56 [ 38%] Building CXX object cudaaligner/CMakeFiles/cudaaligner.dir/src/aligner.cpp.o 09:55:56 [ 38%] Building CXX object cudaaligner/CMakeFiles/cudaaligner.dir/src/aligner_global.cpp.o 09:55:56 [ 38%] Building CXX object cudaaligner/CMakeFiles/cudaaligner.dir/src/alignment.cpp.o 09:55:56 [ 39%] Building CXX object cudaaligner/CMakeFiles/cudaaligner.dir/src/alignment_impl.cpp.o 09:55:56 [ 39%] Building CXX object cudaaligner/CMakeFiles/cudaaligner.dir/src/aligner_global_myers.cpp.o 09:55:56 [ 40%] Building CXX object cudaaligner/CMakeFiles/cudaaligner.dir/src/ukkonen_cpu.cpp.o 09:55:56 [ 40%] Building CXX object cudaaligner/CMakeFiles/cudaaligner.dir/src/aligner_global_myers_banded.cpp.o 09:55:56 [ 40%] Building CXX object cudaaligner/CMakeFiles/cudaaligner.dir/src/aligner_global_hirschberg_myers.cpp.o 09:55:56 [ 42%] Building CXX object cudaaligner/CMakeFiles/cudaaligner.dir/src/needleman_wunsch_cpu.cpp.o 09:56:00 [ 43%] Linking CXX static library libcudaaligner.a 09:56:00 [ 43%] Built target cudaaligner 09:56:39 Scanning dependencies of target cudapoa 09:56:39 [ 45%] Building CXX object cudapoa/CMakeFiles/cudapoa.dir/src/cudapoa.cpp.o 09:56:39 [ 45%] Building CXX object cudapoa/CMakeFiles/cudapoa.dir/version.cpp.o 09:56:39 [ 45%] Linking CXX static library libcudapoa.a 09:56:39 [ 45%] Built target cudapoa 09:56:39 Makefile:162: recipe for target 'all' failed 09:56:39 make: *** [all] Error 2
Unfortunately, I cannot easily extract the Makefile for these builds as I am building singularity images in a build pipeline.
Dominik