Build fails with gcc 7 and 8

[tristanpwdennis]

Hi! I am attempting to build GenomeWorks but it crashes with the following errors.

After make -j install:

[ 44%] Built target cudapoa Makefile:162: recipe for target 'all' failed make: *** [all] Error 2

Then, I try just make and see this one (I also see ith with make -j but further up.

/home/dennistpw/packages/GenomeWorks/3rdparty/spoa/src/simd_alignment_engine.cpp:12:14: fatal error: immintrin.h: No such file or directory

include // AVX2 and lower

          ^~~~~~~~~~~~~

compilation terminated. 3rdparty/spoa/CMakeFiles/spoa.dir/build.make:110: recipe for target '3rdparty/spoa/CMakeFiles/spoa.dir/src/simd_alignment_engine.cpp.o' failed make[2]: [3rdparty/spoa/CMakeFiles/spoa.dir/src/simd_alignment_engine.cpp.o] Error 1 CMakeFiles/Makefile2:413: recipe for target '3rdparty/spoa/CMakeFiles/spoa.dir/all' failed make[1]: [3rdparty/spoa/CMakeFiles/spoa.dir/all] Error 2 Makefile:162: recipe for target 'all' failed make: *** [all] Error 2

I saw on another issue that it may be compiler issue so I switch between gcc/g++ 7 and 8, and no luck.

I ran make VERBOSE=1 2>&1 | tee verbose_build.log and have attached the logs below if that would be more useful!

Versions:

• Ubuntu 18.04.5 LTS (GNU/Linux 4.9.253-tegra aarch64)
• Python 3.6.9
• CUDA Version 10.2.300
• cmake version 3.10.2
• GPU generation Volta
• autoconf and automake both installed

Any help would be greatly appreciated, thank you! :)

verbose_build.log

[EpiSlim]

Hi @tristanpwdennis, we only support x86 architectures for the moment. The Tegra SoC has an ARM CPU, which probably explains why the immintrin.h header was missing.