I'm trying to do an all-vs-all mapping with cudamapper (dev branch, git-baab5668) and it terminates with an exception:
$ cudamapper SRR.unmapped.choped.fastq.gz SRR.unmapped.choped.fastq.gz
Initialized GenomeWorks logger with log level ERROR
-C / --target-indices-in-host-memory not set, using -Q / --query-indices-in-host-memory value: 10
-c / --target-indices-in-device-memory not set, using -q / --query-indices-in-device-memory value: 5
NOTE - Since query and target files are same, activating all_to_all mode. Query index size used for both files.
Query file: SRR.unmapped.choped.fastq.gz, number of reads: 249455
Target file: SRR.unmapped.choped.fastq.gz, number of reads: 249455
Programmatically looking for max cached memory
Using device memory cache of 33390691615 bytes
Device 0 took batch 1 out of 1 batches in total
terminate called without an active exception
Aborted
Environment is CentOS 7 with an NVIDIA Tesla V100-PCIE-32GB. Thank you!
I'm trying to do an all-vs-all mapping with cudamapper (dev branch, git-baab5668) and it terminates with an exception:
Environment is CentOS 7 with an NVIDIA Tesla V100-PCIE-32GB. Thank you!