NVIDIA-Genomics-Research GenomeWorks issues

NVIDIA-Genomics-Research / GenomeWorks

SDK for GPU accelerated genome assembly and analysis

https://clara-parabricks.github.io/GenomeWorks/

Apache License 2.0

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issues

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Permission denied (publickey). fatal: Could not read from remote repository.

#470 SuchismitaSahu1993 closed 4 years ago
4
[tests] upgrade CI harness scripts to be more robust

#469 tijyojwad opened 4 years ago
0
[python] rename py package to genomeworks

#468 tijyojwad closed 4 years ago
3
[sdk] update include paths to use claraparabricks

#467 tijyojwad closed 4 years ago
3
[cudapoa] toward DRY code by merging estimate_max_poas() and calculate_space_per_poa()

#466 r-mafi opened 4 years ago
0
[tests] re-enable C++ tests

#465 tijyojwad closed 4 years ago
3
[cudapoa] Multi-batch binning

#464 r-mafi closed 4 years ago
4
[cudamapper] Support from multiple associated streams

#463 mimaric closed 4 years ago
4
[pycga] remove quast and python tool wrappers

#462 tijyojwad closed 4 years ago
0
[sdk] remove cuda 9.x support

#461 tijyojwad closed 3 years ago
1
[sdk] add CI for CUDA 11 and validate support

#460 tijyojwad closed 4 years ago
9
[logging] remove spdlog as logger dependency

#459 tijyojwad closed 3 years ago
0
[cudapoa] compute kernel for computing distance vector R for adaptive banding

#458 r-mafi closed 4 years ago
0
[cudapoa] compute kernel for computing distance vector R for adaptive banding

#457 r-mafi closed 4 years ago
0
[cudamapper] Correct assert in print_paf()

#456 mimaric closed 4 years ago
0
[cudamapper] Not storing nullptr to host index cache when skip_copy_to_host is set

#455 mimaric closed 4 years ago
0
[cudapoa] graph output in cudaPOA

#454 r-mafi closed 3 years ago
1
[cudamapper] Modify fusion code to be more like minimap2

#453 edawson closed 4 years ago
2
[common] Simplified buffer

#452 mimaric closed 4 years ago
1
[cudamapper] Perform range-check on program arguments.

#451 ahehn-nv opened 4 years ago
0
Re-adjust filters value applied to PAF output...

#450 rilango closed 4 years ago
3
[cudapoa] Member type and size unification

#449 atadkase closed 4 years ago
5
[cudapoa] investigate adaptive banding in cudapoa

#448 tijyojwad closed 4 years ago
0
Install from source needed for dev functionality

#447 rahulmohan closed 4 years ago
1
[cudapoa] error types in cudaPOA

#446 r-mafi closed 3 years ago
0
[cudamapper] Display version information...

#445 rilango closed 4 years ago
1
[cudapoa] variable bandwidth

#444 r-mafi closed 4 years ago
2
[pycga] Pass arguments to setup.py from setup_pyclaragenomics.py directly

#443 ohadmo opened 4 years ago
0
[cudapoa] improve estimation of maximum graph length

#442 r-mafi closed 3 years ago
1
[cudapoa] adding PO-PO alignment

#441 r-mafi closed 3 years ago
1
[cudapoa] increase bandwidth in banded cudapoa

#440 tijyojwad closed 4 years ago
0
[CI] Wheel file creation changes for PyPI

#439 ohadmo closed 4 years ago
3
[CI] Enable PyPI upload in GPU jobs

#438 ohadmo closed 4 years ago
0
[cudamapper] Using new index cache

#437 mimaric closed 4 years ago
3
[sdk] merge master branch into dev-v0.5.0

#436 tijyojwad closed 4 years ago
0
[bindings] replace cython with SWIG for python bindings

#435 tijyojwad closed 3 years ago
1
[cudapoa] changing sample file for bonito example

#434 r-mafi closed 4 years ago
2
[CI] Support different image combinations for pull request branch and master/dev branch

#433 ohadmo opened 4 years ago
0
[cudamapper] Added skip_copy_to_host to IndexCacheHost

#432 mimaric closed 4 years ago
0
[cudapoa] add cudapoa binary for generating msa or consensus

#431 r-mafi closed 4 years ago
1
[sdk] update namespace across whole repo

#430 tijyojwad closed 4 years ago
1
[common] Use int32_t for position_in_read_t and number_of_basepairs_t.

#429 ahehn-nv opened 4 years ago
0
[cudamapper] Move overlaps post-processing to GPU

#428 mimaric opened 4 years ago
1
[cudapoa] optimal multi batch for sample_cudapoa

#427 r-mafi closed 4 years ago
7
[cudamapper] Improved PAF output

#426 mimaric closed 4 years ago
0
[cudapoa] Re mixed usage of local and global index in banded NW

#425 r-mafi opened 4 years ago
0
[SDK] rename SDK to GenomeWorks

#424 tijyojwad closed 4 years ago
0
[cudapoa] fix for Error code 8

#423 r-mafi closed 4 years ago
0
[cudamapper] Overlap end rescue via similarity estimation

#422 edawson closed 4 years ago
10
[docs] README edits

#421 edawson closed 4 years ago
4

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