Update rapids_scanpy_funcs.py to work with new scanpy version and rapids-0.19

NVIDIA-Genomics-Research / rapids-single-cell-examples

Examples of single-cell genomic analysis accelerated with RAPIDS

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Update rapids_scanpy_funcs.py to work with new scanpy version and rapids-0.19 #76

Closed Intron7 closed 2 years ago

Intron7 commented 3 years ago

change location of connectivities in the leiden function from uns['neighbors']['connectivities'] to obsp['connectivities'] since scanpy recently changed it and will depreciate the the old location in upcoming releases.

I also updated the rank_genes_groups function to work with rapids-0.19 in addition to rapids-0.18.