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NVIDIA-Genomics-Research
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rapids-single-cell-examples
Examples of single-cell genomic analysis accelerated with RAPIDS
Apache License 2.0
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Added Resolution for Leiden Function
#71
Intron7
closed
3 years ago
0
minor updates to notebook text
#70
avantikalal
closed
3 years ago
0
Bugfix: Visualization tool is not accessible from remote machine over http…
#69
rilango
closed
3 years ago
0
Change container version
#68
rilango
closed
3 years ago
0
Upgrade to Rapids 0.17
#67
avantikalal
closed
3 years ago
0
new benchmarks
#66
avantikalal
closed
3 years ago
0
updated 1M notebooks for benchmarking
#65
avantikalal
closed
3 years ago
0
Update description
#64
avantikalal
closed
3 years ago
0
A new script to replace launch.sh...
#63
rilango
closed
3 years ago
1
Add atacworks as a dependency
#62
rilango
closed
3 years ago
0
Fix conda env creation issue...
#61
rilango
closed
3 years ago
0
Add multicore-tsne python package.
#60
rilango
closed
3 years ago
0
015 updates
#59
avantikalal
closed
3 years ago
0
Reverting back to rapids0.15
#58
cjnolet
closed
3 years ago
0
reverting to 3f02571
#57
avantikalal
closed
3 years ago
0
updated calls to rapids 0.16
#56
avantikalal
closed
3 years ago
0
fixed timer in atacworks notebook
#55
avantikalal
closed
3 years ago
0
[BUG] Many of cuML's models that use cublas/cusolver/cusparse are limited in the number of cells that can be processed
#54
cjnolet
opened
3 years ago
0
[FEA] Add batching option to `filter_cells` and `filter_genes` in `rapids_scanpy_funcs`
#53
cjnolet
opened
3 years ago
0
added atac reqs to conda files
#52
avantikalal
closed
3 years ago
0
AtacWorks notebook GPU version
#51
avantikalal
closed
3 years ago
0
OverflowError: value too large to convert to int
#50
slowkow
opened
3 years ago
2
Adding benchmark results for a100
#49
cjnolet
closed
3 years ago
0
A new script to replace launch.sh and fix for issues in viz...
#48
rilango
closed
3 years ago
0
Launch script for starting notebooks in a conda env or container...
#47
rilango
closed
3 years ago
1
CUDA MemoryError for loading adata variable names to cudf.Series method
#41
nullbyte91
opened
3 years ago
3
Cleanup docker file...
#40
rilango
closed
3 years ago
0
Docker container with all dependency build for the notebook...
#39
rilango
closed
3 years ago
0
Rapids 0.15 upgrade
#38
avantikalal
closed
3 years ago
0
Added animated GIF to README
#37
avantikalal
closed
4 years ago
0
fixed typo + link in readme
#36
avantikalal
closed
4 years ago
0
Atac benchmarks
#35
avantikalal
closed
4 years ago
0
Added 60K cell dsciATAC notebook, updated README
#34
rmovva
closed
4 years ago
0
Update tables
#33
avantikalal
closed
4 years ago
0
Update notebooks to latest versions used for benchmarking
#32
avantikalal
closed
4 years ago
0
Visualization
#31
avantikalal
closed
4 years ago
0
Colab implementation
#30
saketkc
opened
4 years ago
2
RAPIDS implementation of Scanpy rank_genes_groups appears incorrect
#29
rmovva
opened
4 years ago
6
clarify e2e runtime
#28
avantikalal
closed
4 years ago
0
added e2e runtimes
#27
avantikalal
closed
4 years ago
0
fix typo
#26
avantikalal
closed
4 years ago
0
added commit ID
#25
avantikalal
closed
4 years ago
0
Alal/1 m update
#24
avantikalal
closed
4 years ago
0
Adding documentation of rapids_scanpy_funcs
#23
cjnolet
closed
4 years ago
0
1mil
#22
avantikalal
closed
4 years ago
0
Alal/1mil
#21
avantikalal
closed
4 years ago
0
Revert "Adding 1M neurons notebook w/ UVM"
#20
avantikalal
closed
4 years ago
0
Alal/1mil
#19
avantikalal
closed
4 years ago
0
added instructions for 10X mtx files
#18
avantikalal
closed
3 years ago
0
Adding 1M neurons notebook w/ UVM
#17
cjnolet
closed
4 years ago
0
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