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NVIDIA / VariantWorks

Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/
Apache License 2.0
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[model] add quality score output for consensus pipeline #131

Closed tijyojwad closed 4 years ago

tijyojwad commented 4 years ago

Currently the consensus pipeline inference script only generates the consensus sequence as a fasta. however, it would be helpful to generate a quality score for the sequence as well, and output it into a fastq file.

we can start with using the softmax output of the selected class as a basis qv score calculation.