[Encoders] Handle exception `samtools mpileup` output when searching for insertions in SummaryEncoder

NVIDIA / VariantWorks

Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/

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[Encoders] Handle exception `samtools mpileup` output when searching for insertions in SummaryEncoder #156

Open ohadmo opened 3 years ago

ohadmo commented 3 years ago

When searching for the inserted positions in the pileup strings read from the .pileup file (which was generated by samtools), an exception occurs in the find_insertions() methods when a few pileup reads do not have a digit after the '+' sign, e.g.: TTTtttTt^+t

Was tested on m54328_180927_224427