Closed nalzok closed 3 years ago
Hey there, please detail the setup you're using in terms of hardware. That error occurs when when the program tries to access restricted memory, the machine will send a kill signal. What worked for me was reducing the batch size to 2. However I'm using 2 RTX 2080 Ti GPUs.
Hi @FredMusoro! The good news is, we have just resolved the issue; the bad news is, we have no idea how. Basically, I cloned the conda environment created by another colleague, and it just works.
Our server uses a cluster of 4 GeForce RTX 2080 Ti GPUs.
I am also reproducing the output of conda list
for future reference
# packages in environment at /home/chuan/anaconda3/envs/few-shot:
#
# Name Version Build Channel
_libgcc_mutex 0.1 main
absl-py 0.7.1 pypi_0 pypi
astroid 2.2.5 py37_0 conda-forge
attrs 19.1.0 py_0 conda-forge
audioread 2.1.6 py37_0 conda-forge
autopep8 1.4.4 pypi_0 pypi
backcall 0.1.0 py_0 conda-forge
bleach 3.1.0 py_0 conda-forge
boto 2.49.0 pypi_0 pypi
boto3 1.9.228 pypi_0 pypi
botocore 1.12.228 pypi_0 pypi
bzip2 1.0.8 h516909a_0 conda-forge
ca-certificates 2019.11.27 0
certifi 2019.11.28 py37_0
cffi 1.12.3 py37h8022711_0 conda-forge
chardet 3.0.4 pypi_0 pypi
cudatoolkit 10.0.130 0
cycler 0.10.0 py_1 conda-forge
dbus 1.13.6 he372182_0 conda-forge
decorator 4.4.0 py_0 conda-forge
defusedxml 0.5.0 py_1 conda-forge
docutils 0.15.2 pypi_0 pypi
dominate 2.4.0 pypi_0 pypi
entrypoints 0.3 py37_1000 conda-forge
expat 2.2.5 he1b5a44_1003 conda-forge
ffmpeg 1.4 pypi_0 pypi
fontconfig 2.13.1 h86ecdb6_1001 conda-forge
freetype 2.10.0 he983fc9_0 conda-forge
future 0.17.1 pypi_0 pypi
gensim 3.8.0 pypi_0 pypi
gettext 0.19.8.1 hc5be6a0_1002 conda-forge
glib 2.58.3 h6f030ca_1002 conda-forge
gmp 6.1.2 hf484d3e_1000 conda-forge
gnutls 3.6.5 hd3a4fd2_1002 conda-forge
grpcio 1.22.0 pypi_0 pypi
gst-plugins-base 1.14.5 h0935bb2_0 conda-forge
gstreamer 1.14.5 h36ae1b5_0 conda-forge
h5py 2.9.0 nompi_py37h513d04c_1104 conda-forge
hdf5 1.10.5 nompi_h3c11f04_1100 conda-forge
icu 64.2 he1b5a44_0 conda-forge
idna 2.8 pypi_0 pypi
intel-openmp 2019.4 243
ipykernel 5.1.1 py37h5ca1d4c_0 conda-forge
ipython 7.7.0 py37h5ca1d4c_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
isort 4.3.21 py37_0 conda-forge
jedi 0.14.1 py37_0 conda-forge
jinja2 2.10.1 py_0 conda-forge
jmespath 0.9.4 pypi_0 pypi
joblib 0.14.1 py_0
jpeg 9c h14c3975_1001 conda-forge
json5 0.8.5 py_0 conda-forge
jsonschema 3.0.2 py37_0 conda-forge
jupyter_client 5.3.1 py_0 conda-forge
jupyter_core 4.4.0 py_0 conda-forge
jupyterlab 1.0.4 py37_0 conda-forge
jupyterlab_server 1.0.0 py_1 conda-forge
kiwisolver 1.1.0 py37hc9558a2_0 conda-forge
krippendorff 0.3.0 pypi_0 pypi
lame 3.100 h14c3975_1001 conda-forge
lazy-object-proxy 1.4.1 py37h516909a_0 conda-forge
libblas 3.8.0 11_openblas conda-forge
libcblas 3.8.0 11_openblas conda-forge
libffi 3.2.1 he1b5a44_1006 conda-forge
libflac 1.3.1 hf484d3e_1002 conda-forge
libgcc-ng 9.1.0 hdf63c60_0
libgfortran-ng 7.3.0 hdf63c60_0
libiconv 1.15 h516909a_1005 conda-forge
liblapack 3.8.0 11_openblas conda-forge
libogg 1.3.2 h14c3975_1001 conda-forge
libopenblas 0.3.6 h6e990d7_6 conda-forge
libpng 1.6.37 hed695b0_0 conda-forge
librosa 0.7.0 py_0 conda-forge
libsndfile 1.0.28 hf484d3e_1000 conda-forge
libsodium 1.0.17 h516909a_0 conda-forge
libstdcxx-ng 9.1.0 hdf63c60_0
libtiff 4.0.10 h57b8799_1003 conda-forge
libuuid 2.32.1 h14c3975_1000 conda-forge
libvorbis 1.3.5 h14c3975_1001 conda-forge
libxcb 1.13 h14c3975_1002 conda-forge
libxml2 2.9.9 hee79883_2 conda-forge
llvmlite 0.29.0 py37hfd453ef_1 conda-forge
lz4-c 1.8.3 he1b5a44_1001 conda-forge
mad 0.15.1b he1b5a44_0 conda-forge
markdown 3.1.1 pypi_0 pypi
markupsafe 1.1.1 py37h14c3975_0 conda-forge
matplotlib 3.1.1 py37_1 conda-forge
matplotlib-base 3.1.1 py37he7580a8_1 conda-forge
mccabe 0.6.1 py_1 conda-forge
mistune 0.8.4 py37h14c3975_1000 conda-forge
mkl 2019.4 243
nbconvert 5.5.0 py_0 conda-forge
nbformat 4.4.0 py_1 conda-forge
ncurses 6.1 hf484d3e_1002 conda-forge
nettle 3.4.1 h1bed415_1002 conda-forge
ninja 1.9.0 h6bb024c_0 conda-forge
nltk 3.4.5 pypi_0 pypi
notebook 6.0.0 py37_0 conda-forge
numba 0.45.1 py37hb3f55d8_0 conda-forge
numpy 1.17.0 py37h95a1406_0 conda-forge
olefile 0.46 py_0 conda-forge
opencv-python 4.1.0.25 pypi_0 pypi
openh264 1.8.0 hdbcaa40_1000 conda-forge
openssl 1.1.1d h7b6447c_3
pandas 0.25.0 py37hb3f55d8_0 conda-forge
pandoc 2.7.3 0 conda-forge
pandocfilters 1.4.2 py_1 conda-forge
parso 0.5.1 py_0 conda-forge
patsy 0.5.1 py_0 conda-forge
pcre 8.41 hf484d3e_1003 conda-forge
pexpect 4.7.0 py37_0 conda-forge
pickleshare 0.7.5 py37_1000 conda-forge
pillow 6.1.0 py37h6b7be26_1 conda-forge
pip 19.2.1 py37_0 conda-forge
prometheus_client 0.7.1 py_0 conda-forge
prompt_toolkit 2.0.9 py_0 conda-forge
protobuf 3.9.1 pypi_0 pypi
pthread-stubs 0.4 h14c3975_1001 conda-forge
ptyprocess 0.6.0 py_1001 conda-forge
pycodestyle 2.5.0 pypi_0 pypi
pycparser 2.19 py37_1 conda-forge
pygments 2.4.2 py_0 conda-forge
pylint 2.3.1 py37_0 conda-forge
pyparsing 2.4.2 py_0 conda-forge
pyqt 5.9.2 py37hcca6a23_2 conda-forge
pyrsistent 0.15.4 py37h516909a_0 conda-forge
pysoundfile 0.10.2 py_1001 conda-forge
python 3.7.3 h33d41f4_1 conda-forge
python-dateutil 2.8.0 py_0 conda-forge
pytorch 1.2.0 py3.7_cuda10.0.130_cudnn7.6.2_0 pytorch
pytorch-pretrained-bert 0.6.2 pypi_0 pypi
pytz 2019.2 py_0 conda-forge
pyzmq 18.0.2 py37h1768529_2 conda-forge
qt 5.9.7 h0c104cb_3 conda-forge
readline 8.0 hf8c457e_0 conda-forge
regex 2019.8.19 pypi_0 pypi
requests 2.22.0 pypi_0 pypi
resampy 0.2.1 py_1 conda-forge
s3transfer 0.2.1 pypi_0 pypi
scikit-learn 0.21.3 py37hcdab131_0 conda-forge
scipy 1.3.1 py37h921218d_0 conda-forge
seaborn 0.9.0 py_1 conda-forge
send2trash 1.5.0 py_0 conda-forge
setuptools 41.0.1 py37_0 conda-forge
sip 4.19.8 py37hf484d3e_1000 conda-forge
six 1.12.0 py37_1000 conda-forge
slurmpy 0.0.7 pypi_0 pypi
smart-open 1.8.4 pypi_0 pypi
sox 14.4.2 h27f72bc_1013 conda-forge
sqlite 3.29.0 hcee41ef_0 conda-forge
statsmodels 0.10.1 py37hc1659b7_0 conda-forge
tb-nightly 1.15.0a20190806 pypi_0 pypi
terminado 0.8.2 py37_0 conda-forge
testpath 0.4.2 py_1001 conda-forge
tk 8.6.9 hed695b0_1002 conda-forge
torchaudio 0.3.0 pypi_0 pypi
torchvision 0.4.0 py37_cu100 pytorch
tornado 6.0.3 py37h516909a_0 conda-forge
tqdm 4.40.0 py_0
traitlets 4.3.2 py37_1000 conda-forge
urllib3 1.25.3 pypi_0 pypi
wcwidth 0.1.7 py_1 conda-forge
webencodings 0.5.1 py_1 conda-forge
werkzeug 0.15.5 pypi_0 pypi
wheel 0.33.4 py37_0 conda-forge
wordsegment 1.3.1 pypi_0 pypi
wrapt 1.11.2 py37h516909a_0 conda-forge
x264 1!152.20180806 h14c3975_0 conda-forge
xorg-libxau 1.0.9 h14c3975_0 conda-forge
xorg-libxdmcp 1.1.3 h516909a_0 conda-forge
xz 5.2.4 h14c3975_1001 conda-forge
zeromq 4.3.2 he1b5a44_2 conda-forge
zlib 1.2.11 h516909a_1005 conda-forge
zstd 1.4.0 h3b9ef0a_0 conda-forge
Original Traceback (most recent call last): File "/home/chuan/anaconda3/envs/few-shot-new/lib/python3.7/site-packages/numpy/core/function_base.py", line 117, in linspace num = operator.index(num) Go to your numpy and change the line to:
num = operator.index(int(num))
conda install numpy=1.17.5 --yes
I also have this issue when using Colab with numpy 1.18.1, but after downgrading numpy to 1.17 works.
+1 numpy 17 vs numpy 18
Solved by pip install numpy==1.17.5
I am on Ubuntu 18.04. It seems that there are some issues with
DataLoader
?