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NVlabs / nvbio

NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.
BSD 3-Clause "New" or "Revised" License
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Simple Traceback Example #26

Open r-barnes opened 5 years ago

r-barnes commented 5 years ago

The file examples/proteinsw/proteinsw.cu contains a simple example of scoring potential alignments.

Is a similarly simple example available of traceback?

foertter commented 4 years ago

I think everything the original authors had is in this repo. Were you able to create one by any chance?

r-barnes commented 4 years ago

@foertter : I'm afraid I wasn't able to get Smith-Waterman tracebacks working. I'll take another look over the next few days and see if I can do a better job figuring them out this time. I have a new, GPU enabled Thinkpad, so that's easier now! (Don't worry: the old one's still working fine.)