Include the Mapper and Model applications in a library.

[gilbertmike]

Include the Mapper and Model applications in a new library by:

1. Rename the applications from Application to application::Mapper or application::Model to avoid name collision. This also adds the application namespace.
2. Include the sources for the mapper and model in a new library, called timeloop-applications.

Note that code that links to timeloop-applications also needs to link to timeloop-mapper.

Known Issues

• Writing to files does not seem to work well (at least, as is) when calling from Python through PyBind11. A solution is to refactor the part of Run() that writes to files and just don't call that in the Python version.

[angshuman-parashar]

Build fails on MacOS Ventura 13.6.6, Macbook Pro M1, clang version 14.0.3 (clang-1403.0.22.14.1), target arm64-apple-darwin22.6.0.

Log attached. log.txt

[gilbertmike]

This seems to be caused by the way I'm including symbols in the libraries. I've included the application symbols in timeloop-mapper. Would you mind trying again now?

[angshuman-parashar]

src/applications/mapper/mapper.cpp:395:41: error: use of undeclared identifier 'oaves_prefix'
                                        oaves_prefix,
                                        ^

It looks like a bunch of output file names (around line 366) disappeared.

[gilbertmike]

Yes, I thought I moved all the file printing away since PyTimeloop stopped crashing, but I realized MapperThread also does a bunch of printing. Somehow these do not crash PyTimeloop so I did not catch them at first. I'm looking into it.

[angshuman-parashar]

Regression test passed. Merging.