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NYU-BFX / hic-bench

A set of pipelines for Hi-C and ChIP-Seq analysis.
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compile error #6

Open okokookk opened 7 years ago

okokookk commented 7 years ago

Hi.

I got the following error during make in code / src: How do I resolve this?

/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib/libgsl.so: undefined reference to cblas_dtrsv' /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib/libgsl.so: undefined reference tocblas_zher2' /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib/libgsl.so: undefined reference to cblas_sasum' /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib/libgsl.so: undefined reference tocblas_zaxpy' collect2: error: ld returned 1 exit status make: *** [gtools-hic] Error 1

gongyixiao commented 7 years ago

@tsirigos may comment on it. But he is in a meeting and will be back on May 1st.

gongyixiao commented 7 years ago

I guess this may help a little. I don't know too much about it though: https://www.google.com/search?q=lib%2Flibgsl.so%3A+undefined+reference+to&rlz=1C5CHFA_enUS584US584&oq=lib%2Flibgsl.so%3A+undefined+reference+to&aqs=chrome..69i57j69i58&sourceid=chrome&ie=UTF-8

bhill-17 commented 5 years ago

@gongyixiao @tsirigos I am trying to use hic-bench for data analysis and experiencing the same error at the person above, and I've previously checked out the link form April 27 and I'm still experiencing and issue. So could either of you offer more guidance on how to fix the compile error?

Thanks