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NYU-BFX / hic-bench

A set of pipelines for Hi-C and ChIP-Seq analysis.
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how to set the params.tcsh file #9

Closed liufuyan2016 closed 7 years ago

liufuyan2016 commented 7 years ago

Dear professor, when I set my params.tcsh file ,the erro below is occured. I do not know how to set the line in module load . ######################################## $cat inputs/params/params.tcsh

!/bin/tcsh

unload

module unload samtools module unload java module unload gcc module unload python module unload r

load basic tools

module load python/2.7.3

module load /share/nas2/genome/biosoft/samtools/1.3.1/ module load /share/nas2/genome/biosoft/bedtools/2.17.0/ module load /share/nas2/genome/biosoft/java/jdk/1.8.0_31/ module load /share/nas2/genome/biosoft/R/3.2.2/ ###################################### note: the softwares position in my computer is located in share/nas2/genome/biosoft/samtools/1.3.1/, /share/nas2/genome/biosoft/bedtools/2.17.0/,/share/nas2/genome/biosoft/java/jdk/1.8.0_31/,/share/nas2/genome/biosoft/R/3.2.2/

报错信息： ModuleCmd_Load.c(208):ERROR:105: Unable to locate a modulefile for '/share/nas2/genome/biosoft/samtools/1.3.1' ModuleCmd_Load.c(208):ERROR:105: Unable to locate a modulefile for '/share/nas2/genome/biosoft/bedtools/2.17.0' ModuleCmd_Load.c(208):ERROR:105: Unable to locate a modulefile for '/share/nas2/genome/biosoft/java/jdk/1.8.0_31' ModuleCmd_Load.c(208):ERROR:105: Unable to locate a modulefile for '/share/nas2/genome/biosoft/R/3.2.2'

tsirigos commented 7 years ago

How about this? module load samtools/1.3.1