NYU-DiffusionMRI / DESIGNER-v2

Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline Version 2
https://nyu-diffusionmri.github.io/DESIGNER-v2/
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Add eddy_fakeb flag for datasets with variable TE or variable b-tensor shape #10

Closed led-0 closed 3 months ago

led-0 commented 5 months ago

For datasets with variable TE or variable b-tensor shape, measurements of the same b-value may belong to different volume series and need to be treated separately in eddy registration. In this PR, an eddy_fakeb argument has been added to scale the b-value file of each volume series by a customized factor. Based on this array, a fakeb_grad.txt will be created as input for eddy, and the true b-value information will be restored to the working.mif after eddy processing.