Need to refactor variable name in cnvkit process

NYU-Molecular-Pathology / NGS580-nf

Target exome sequencing analysis for NYU NGS580 gene panel

GNU General Public License v3.0

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Closed stevekm closed 5 years ago

stevekm commented 5 years ago

cnvkit process includes variable ref_fai13, need to rename this and other ref fasta variables to ref_fai, etc.