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NYU-Molecular-Pathology / NGS580-nf

Target exome sequencing analysis for NYU NGS580 gene panel
GNU General Public License v3.0
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Add CNVKit targets annotation file creation method #16

Closed stevekm closed 5 years ago

stevekm commented 5 years ago

Need to add an easy scripted method to create the refFlat targets annotation file for a new targets.bed file. Consider using a separate Nextflow pipeline since we will need to incorporate Singularity container to get CNVKit loaded

stevekm commented 5 years ago

Targets annotation file is just the original .bed file with gene labels in the 4th column.