search

NYU-Molecular-Pathology / NGS580-nf

Target exome sequencing analysis for NYU NGS580 gene panel
GNU General Public License v3.0
10 stars 6 forks source link

LoFreq Somatic output include dbSNP variants #31

Closed stevekm closed 4 years ago

stevekm commented 4 years ago

LoFreq Somatic variant calling outputs snvs and indels with and without dbSNP; need to make sure to update pipeline to use the variants with dbSNP, do not exclude dbSNP variants.