Sometimes values loaded from JSON are not available inside processes

NYU-Molecular-Pathology / NGS580-nf

Target exome sequencing analysis for NYU NGS580 gene panel

GNU General Public License v3.0

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Sometimes values loaded from JSON are not available inside processes #39

Open stevekm opened 4 years ago

stevekm commented 4 years ago

See issue here: https://github.com/nextflow-io/nextflow/issues/1342

Need to make sure that all required values are being loaded into a new object(s), out of the JSON parsed object, and use those instead throughout the pipeline