Consider using a Nextflow process to retrieve the inputs from a samplesheet, maybe this will work better since processes always re-run if the input (samplesheet) changes, not sure if Nextflow will always detect changes to external items such as samplesheets on 'resume'?
See comments here : https://github.com/nextflow-io/nextflow/issues/1342
Consider using a Nextflow process to retrieve the inputs from a samplesheet, maybe this will work better since processes always re-run if the input (samplesheet) changes, not sure if Nextflow will always detect changes to external items such as samplesheets on 'resume'?